barSeed - Barley Seed Development Database

Probe CUST_25590_PI390587928

Source Contig U35_29260

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25590_PI390587928	Hv_44K_v2	AATCTATGGCACCTCTCCTCGTATTGTATTGCAGCACGCGTACGTACTCGTAGTAAAAAG	120	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.166	0.192	0.316	2.138	2.204	2.229
Raw	2.764	7.044	13.321	137.970	51.115	55.504

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_29260	529	3e-25	121 - 180	100	60 / 60	minus

Contig Sequence (529 bp)

>U35_29260 529 Hv_44K_v2
CGGCCGAGAGAGAGCCACCGTGAGCGTGTGAGAGCGCGCGTCCACGGCGGCGGCGGCCGT
GTGCTCCTACGTGGCACGGCGCGATGCTCAGTCAGCCAGTGGAGTGGAGTGGGGTGCTAC
CTTTTTACTACGAGTACGTACGCGTGCTGCAATACAATACGAGGAGAGGTGCCATAGATT
CCATACCACAGTGAACGCCGACGCTAGCGCAGATGGGTGCTTGCTTCGCCGGACAGTCAC
TTGAGGTAGCTGATGCTGACGCCGCCGACGGTGACCATCTCGCACCCGCACCTCGGCACC
AGCGACACGACCACCGTCTTGTCGCCATCCGCGCCGATGTCGTCCATCAGGTCGCACACG
CCGAACCTCGCCACCGTCTTCACCGGCCCGTTCCTCATCTCGTCTGACCGGGCCATGTGC
GGCGTGTACCTGCCCGGGCGGCCGCCCGGGCAGGTACATAAAGATCCCAGCTACTGCCGA
ATGTGTTCCTTCTATCAAGGAAGTCATTGCTAATGGCATCAGCGTCAAT

Homology of Contig U35_29260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None