barSeed - Barley Seed Development Database

Probe CUST_25575_PI390587928

Source Contig U35_31581

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25575_PI390587928	Hv_44K_v2	GCTTCCTCTTCTCGCTGCTCGTGGACCGCCAGGCGCCCGCCAACCCCGCGCGCGCGGACG	150	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376037	1273	2e-24	173 - 232	100	60 / 60	plus	ABC42189
MLOC	AK368173	994	2e-24	152 - 211	100	60 / 60	plus	None
MLOC	MLOC_78167.1	714	2e-24	9 - 68	100	60 / 60	minus	None
JLOC1	JLOC1_52101.1	527	8e-25	9 - 68	100	60 / 60	minus
Harvest35	U35_31581	210	3e-25	151 - 210	100	60 / 60	plus

Contig Sequence (210 bp)

>U35_31581 210 Hv_44K_v2
ACCGAGCACAACAGAGAAAAATGTCCGGCGACGTCGCTCGCAAGGAGCTCCGGGCGCGCG
TGGGGGCGATGCCGTGGGCGGTGCGGCTCCAGCTGCGCGCGCTCGAGGCCGCCGTCGACG
CCACGCAGCGCCGGGACGGCACCGTCAACCGCTTCCTCTTCTCGCTGCTCGTGGACCGCC
AGGCGCCCGCCAACCCCGCGCGCGCGGACG

Homology of Contig U35_31581 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None