barSeed - Barley Seed Development Database

Probe CUST_25569_PI390587928

Source Contig U35_17294

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25569_PI390587928	Hv_44K_v2	AACCCAAAAGATGTACGCTTGCTTCAGAAGTATTATTGACTAGTAGTACTGTTGCTTCTT	604	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.613	2.171	1.124	0.700	0.251	0.254
Raw	7737.413	7333.027	3322.040	3147.537	418.184	462.393

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374357	1036	2e-24	977 - 1036	100	60 / 60	plus	ABC07384
JLOC1	JLOC1_9659.2	1089	8e-25	949 - 1008	100	60 / 60	plus
JLOC1	JLOC1_9659.1	1117	8e-25	977 - 1036	100	60 / 60	plus
Harvest21	ABC07386	961	3e-25	884 - 943	100	60 / 60	plus
Harvest35	U35_17295	1061	3e-25	985 - 1044	100	60 / 60	plus
Harvest35	U35_17294	681	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_17294 681 Hv_44K_v2
GTACTGCACCTGTGGAGCGCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGTGCTGC
TTTCAAGGAGGAAGCTGCCGTCAATGGTGGCGCTGGTGGCTTTGATGGTGACATGTCACG
CTCAAGGGGCTTTGGCTTTGGCGCTGTCGGTGGCATGGGTGGCGGCATGGGAGCCGGCGC
AGCCGGTGGTCGTGCCAGTCGCCCTGGCTGGAAGTCTGGCGACTGGATTTGCACCAGGTC
TGGATGCAACGAGCACAACTTCGCCAGCAGGCAGGAGTGCTTCAGGTGCAACGCGCCGAG
GGACTCCGGTAGCGCCACACCATACGAAAATTTCTTGCACTGAGGTGTAGGAAGCCCGTG
ACGGCGGCGACGAGCAGAAGCAGAGTGTCCGTGTCCTCGTCATCATCATAAGAAGAAGAA
AGTGGAATGCAAAGAAATCCTCCTCGAGTGCATGCTTACTAGTTTTGTCTCTTCCCGTTT
TAGATTTGGTTGTCATTTCCCATTTGGGACAGAGTCCGTCCGTCTGTCTGATCGATGATG
ACTAGCTATGTTTACCGTTTTATTATTACCGTTCCTTTTATCAAGTTTGCAGTTCGAGTT
ATGTAACCCAAAAGATGTACGCTTGCTTCAGAAGTATTATTGACTAGTAGTACTGTTGCT
TCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None