barSeed - Barley Seed Development Database

Probe CUST_25568_PI390587928

Source Contig U35_17295

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25568_PI390587928	Hv_44K_v2	AACCCAAAAGATGTACGCTTGCTTCAGAAGTATTATTGACTAGTAGTACTGTTGCTTCTT	984	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.786	2.194	1.130	0.691	0.240	0.255
Raw	8099.063	7409.487	3328.903	3065.113	400.193	462.288

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374357	1036	2e-24	977 - 1036	100	60 / 60	plus	ABC07384
JLOC1	JLOC1_9659.2	1089	8e-25	949 - 1008	100	60 / 60	plus
JLOC1	JLOC1_9659.1	1117	8e-25	977 - 1036	100	60 / 60	plus
Harvest21	ABC07386	961	3e-25	884 - 943	100	60 / 60	plus
Harvest35	U35_17295	1061	3e-25	985 - 1044	100	60 / 60	plus
Harvest35	U35_17294	681	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_17295 1061 Hv_44K_v2
GGGCTGCAGGGAAAGAAATCCAAGATAAAGAGGCAGGTTTTAATTCTCTCCTTAAATCTC
CTCTCCCTTCATCAGTTTTAAAAAAATCCTTGTCGCTCCTCCCCCTTCCTCGATCTCCCG
ACGAGATTGTCCTCGCTCGCCGTCGCACCGGATCGCCGCCGGAACGTTTCCTCGACCAGG
CAAGATGAACAGGAAGCCAGGAGACTGGGACTGCAGGTCGTGCCAGCACCTCAACTTCAG
TCGCCGGGACCTATGCCAGCGCTGCGGTGAGCCACGTAGTGCCGCTGACCGTGGCAGCGT
CGGTGGTGCTCTTGGTGGTGACTACGCCAACTTTGGCGGCCGTGGCGGGGGTGGTTCCTC
ATTTGGTGCCGGCTTTGGTGCCGGCTCTGACGTCCGCCCGGGTGACTGGTACTGCACCTG
TGGAGCGCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGTGCTGCTTTCAAGGAGGA
AGCTGCCGTCAATGGTGGCGCTGGTGGCTTTGATGGTGACATGTCACGCTCAAGGGGCTT
TGGCTTTGGCGCTGTCGGTGGCATGGGTGGCGGCATGGGAGCCGGCGCAGCCGGTGGTCG
TGCCAGTCGCCCTGGCTGGAAGTCTGGCGACTGGATTTGCACCAGGTCTGGATGCAACGA
GCACAACTTCGCCAGCAGGCAGGAGTGCTTCAGGTGCAACGCGCCGAGGGACTCCGGCAC
TGAGGTGTAGGAAGCCCGTGACGGCGGCGACGAGCAGAAGCAGAGTGTCCGTGTCCTCGT
CATCATCATAAGAAGAAGAAAGTGGAATGCAAAGAAATCCTCCTCGAGTGCATGCTTACT
AGTTTTGTCTCTTCCCGTTTTAGATTTGGTTGTCATTTCCCATTTGGGACAGAGTCCGTC
CGTCTGTCTGATCGATGATGACTAGCTATGTTTACCGTTTTATTATTACCGTTCCTTTTA
TCAAGTTTGCAGTTCGAGTTATGTAACCCAAAAGATGTACGCTTGCTTCAGAAGTATTAT
TGACTAGTAGTACTGTTGCTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17295 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10920.6	167	9e-79	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi3g07610.6	186	2e-85
Arabidopsis v10	AT3G15680.1	164	3e-54	Ran BP2/NZF zinc finger-like superfamily protein \| chr3:5315437-5316048 FORWARD LENGTH=164