- Probe CUST_25567_PI390587928
- Source Contig U35_31589
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25567_PI390587928 | Hv_44K_v2 | ATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCGTCCATCTCCAATCCCAAAGACA | 189 | GeneList: thistle1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.659 | 1.926 | 1.039 | 0.789 | 0.365 | 0.381 |
| Raw | 1022.959 | 512.869 | 258.680 | 297.285 | 51.279 | 58.576 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_31589 | 387 | 3e-25 | 190 - 249 | 100 | 60 / 60 | plus |
Contig Sequence (387 bp)
>U35_31589 387 Hv_44K_v2 TCGAGCACTGTTGGCCTAAATTAATGCCGGATAAAAAGGATTTTGGGTATAGTTTTCCTT GTGACGGCCCAGGGCGCGGCGGTACTTGTGATATTTGGCTGCTTGGGACGCATTTTATTT GGCAGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACTTTTTATTGGCATTGGAAACA TATCACATTATGGCAGGGCAACGTTTCACAATTTAATGAATCCTCCGTCCATCTCCAATC CCAAAGACACAGCTGCTAGCTCGCAGAATTCATACCCTGGCTCTGTTCCTGCTCTGTTCT TGCTGGCTCTGCTCCTGGCTTGACCTCTTCTCCTTGCCACGGACAGAGGAGTACGTCGCA GAGTCCTTTCGCCCGTCCCCTATTTTG
Homology of Contig U35_31589 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |