barSeed - Barley Seed Development Database

Probe CUST_25566_PI390587928

Source Contig U35_17296

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25566_PI390587928	Hv_44K_v2	CCGTTCCTTTTATCAAGTTTGCAGTTCGAGTTAGTAACCCAAAAGATGTACGCTTGCTTC	931	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.369	1.968	1.064	0.724	0.246	0.248
Raw	7906.340	7261.383	3457.660	3615.350	443.709	494.433

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374357	1036	7e-23	941 - 1001	98	60 / 61	plus	ABC07384
JLOC1	JLOC1_9659.2	1089	4e-23	913 - 973	98	60 / 61	plus
JLOC1	JLOC1_9659.1	1117	4e-23	941 - 1001	98	60 / 61	plus
Harvest21	ABC07386	961	1e-23	848 - 908	98	60 / 61	plus
Harvest21	ABC07384	753	1e-23	657 - 717	98	60 / 61	plus	ABC07384
Harvest35	U35_17296	1027	3e-25	932 - 991	100	60 / 60	plus
Harvest35	U35_17295	1061	1e-23	949 - 1009	98	60 / 61	plus
Harvest35	U35_17294	681	1e-23	569 - 629	98	60 / 61	plus
Harvest35	U35_33400	429	6e-22	79 - 139	97	59 / 61	minus

Contig Sequence (1027 bp)

>U35_17296 1027 Hv_44K_v2
GCACTTCTCATCTTGGAGCTCAGCAGCACAGCATCCAAGCTTTTTCTTCGGCAAGATGAA
CAGGAAGCCAGGAGACTGGGACTGCAGGTCGTGCCAGCACCTCAACTTCAGTCGCCGGGA
CCTATGCCAGCGCTGCGGTGAGCCACGTAGTGCCGCTGACCGTGGCAGCGTCGGTGGTGC
TCTTGGTGGTGACTACGCCAACTTTGGCGGCCGTGGCGGGGGTGGTTCCTCATTTGGTGC
CGGCTTTGGTGCCGGCTCTGACGTCCGCCCGGGTGACTGGTACTGCACCTGTGGAGCGCA
CAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGTGCTGCTTTCAAGGAGGAAGCTGCCGT
CAATGGTGGCGCTGGTGGCTTTGATGGTGACATGTCACGCTCAAGGGGCTTTGGCTTTGG
CGCTGTCGGTGGCATGGGTGGCGGCATGGGAGCCGGCGCAGCCGGTGGTCGTGCCAGTCG
CCCTGGCTGGAAGTCTGGCGACTGGATTTGCACCAGGTCTGGATGCAACGAGCACAACTT
CGCCAGCAGGCAGGAGTGCTTCAGGTGCAACGCGCCGAGGGACTCCGGTAGCGCCACACC
ATACGAAAATTTCTTGTAAACTATCAGATCCTGCTCCCCTTGACTCGGCGTTAGATGCCC
CTGTCTCTAACCCCATGTATCTTGTGCATCTATCTGCAGGCACTGAGGTGTAGGAAGCCC
GTGACGGCGGCGACGAGCAGAAGCAGAGTGTCCGTGTCCTCGTCATCATCATAAGAAGAA
GAAAGTGGAATGCAAAGAAATCCTCCTCGAGTGCATGCTTACTAGTTTTGTCTCTTCCCG
TTTTAGATTTGGTTGTCATTTCCCATTTGGGACAGAGTCCGTCCGTCTGTCTGATCGATG
ATGACTAGCTATGTTTACCGTTTTATTATTACCGTTCCTTTTATCAAGTTTGCAGTTCGA
GTTAGTAACCCAAAAGATGTACGCTTGCTTCAGAAGTATTATTGACTAGTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_17296 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10920.2	173	2e-81	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi3g07610.1	193	2e-90
Arabidopsis v10	AT3G15680.1	164	5e-55	Ran BP2/NZF zinc finger-like superfamily protein \| chr3:5315437-5316048 FORWARD LENGTH=164