barSeed - Barley Seed Development Database

Probe CUST_25565_PI390587928

Source Contig U35_17297

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25565_PI390587928	Hv_44K_v2	AACAGAATAATGAGCCCAGGAACGAAGCGTAATTTTACCTTTGTGGGGCCAGCTAAAAAA	721	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.011	0.069	0.647	1.239	1.557	2.091
Raw	273.138	5001.963	40638.300	111123.233	52143.333	77185.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375841	795	3e-22	736 - 791	100	56 / 56	plus	ABC07078
MLOC	MLOC_2612.2	885	3e-22	567 - 622	100	56 / 56	plus	ABC07078
JLOC1	JLOC1_1555.1	1238	1e-22	559 - 614	100	56 / 56	plus
Harvest21	ABC07077	248	3e-25	178 - 237	100	60 / 60	plus
Harvest21	ABC07078	848	5e-23	718 - 773	100	56 / 56	plus	ABC07078
Harvest35	U35_17297	852	3e-25	722 - 781	100	60 / 60	plus

Contig Sequence (852 bp)

>U35_17297 852 Hv_44K_v2
GATCGATGGAGTCCTCCAAGAAGAACCTGTGCGAGATCCACCGCGGCGACTGGGGCGGCA
GGCGCGTCCTCGGCGCCTCCCTCCTCGCCGCCGCGGTTGTCGCGGCCGTCATCGCGCTCG
CGCTCTTCCTCGTCTACCGCCCCATGAAGCCGCAGGCCACCGTGGCGCGCGCCGGCGTGT
ACCGCCTCGTGAGCGCGGCCGCCCCCGGCGCCAACAACTCGGCGCCGACGCCCTACGCGC
TCTCCGCCACCGTGCAGTTCACGCTGCTGCTGCACAACCCCAGCGACCGCACCGCGGTGA
CCTACGACGCGCTCCTCGCCTACGTGACGTACCGCGGGGAGATGGTGGCCCCGCCCGCGC
AGCTCCCGCTGGTGCTCCAGGACCCCGGCGCCGACGTGGGGCTGTCGCCGCTGCTGGGAG
GCGATGGGGGCGCCCCCGTGCCGGTGTCGGCCGACGCGGTGGACGCGCTGCGCGCGGACT
GCGTGGCGGGGCGCGTGCAGCTCCGGCTCGTCGTCATGGGGCGGGTCAGGTACAGGTCCG
GGCCGTTCAAGAGCGCGTGGCGCGACCTGTACGTGCGGTGCGACGCCATCCTCGGCGTGA
CCGTGCAGGCAGCTGCTGGAGGCGGCGGCGGCGGCGACGTGCCGCTGCTGGAGTACCCGA
AGTGCGCCGTGGACGCCTGAGTTTTGTTTCGCGCCAGATGTGGCGAGTTTGAGTGGGCAA
TAACAGAATAATGAGCCCAGGAACGAAGCGTAATTTTACCTTTGTGGGGCCAGCTAAAAA
AAAAAAAAAAAAACGTTTACTTTATCCTGCAAAAAATGCGCATGTTTTCACATTGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_17297 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36210.1	219	6e-59	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None