- Probe CUST_25560_PI390587928
- Source Contig U35_43562
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25560_PI390587928 | Hv_44K_v2 | AACTCGCGGTTGCAATTGCTGTCGGGCCGATGATGAGTGGAAGCATTTGTGTTTAAAAAA | 11 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.070 | 1.991 | 1.170 | 0.703 | 0.295 | 0.439 |
| Raw | 11958.833 | 18107.900 | 9267.360 | 9167.750 | 1279.771 | 2082.227 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK360950 | 1510 | 3e-21 | 1344 - 1397 | 100 | 54 / 54 | plus | ABC40387 |
| MLOC | MLOC_37687.1 | 1537 | 3e-21 | 175 - 228 | 100 | 54 / 54 | minus | ABC40387 |
| JLOC1 | JLOC1_24428.1 | 1561 | 2e-21 | 1214 - 1267 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC40387 | 498 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC40387 |
| Harvest35 | U35_43562 | 498 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (498 bp)
>U35_43562 498 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAACACAAATGCTTCCACTCATCATCGGCCCGACAGCAATTGC AACCGCGAGTTCCTCCTATCTAACAGTTCGGCACAGGCAAAGGGGGGGTTCGAAAACTGG AAAAGGATCAAAACCCCCCACACGACATTATTCTACTACAGCAACGCCTAACACTGTTCG TTTCTTCAGTAACTCATCATCCTCGGCCAGTGGTCTGCCTAAGGGCTGTTTCATCATCAT CGTCGGCTAGTCAAGGGGCTTGTCCTTCTCGGCGAGGAGGATATCCTTCCACCCCTCGTA AAACATCCAGGTGATGCCCGAATTCGGCATCACCTTGAGGCAGCTCGCCCCCCACCCACG GTAGATCCCCAGGAGGCCCTCCTCCCGGATCACTTTTGACAGGGCCGCCACCATGTTGGG CGGGCACTTCCCCTGCAGGGCGCCCACCATGAGCCGCTTCCTCGCCACCTCCAACGGGAA ACTGATCGTGCTTGCCGT
Homology of Contig U35_43562 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |