barSeed - Barley Seed Development Database

Probe CUST_25555_PI390587928

Source Contig U35_29273

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25555_PI390587928	Hv_44K_v2	ACTCAGGTGAAAAGACGGAAACGCCCACCGCCTCCTCCCCTGGTTCGAACCCATCCATGG	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371457	2092	3e-22	2 - 57	100	56 / 56	plus	ABC05417 ABC26919
Harvest21	ABC28512	335	3e-25	17 - 76	100	60 / 60	plus
Harvest35	U35_29273	335	3e-25	17 - 76	100	60 / 60	plus

Contig Sequence (335 bp)

>U35_29273 335 Hv_44K_v2
CCGAAACCCCGTTGGTACTCAGGTGAAAAGACGGAAACGCCCACCGCCTCCTCCCCTGGT
TCGAACCCATCCATGGCCGACGGCGACGGCGGAGCGTCGCCGGCGCGCGAGGGCGGCGGC
AGCGGAGCGTGGGTCCGCGTCTACGACCGGATGCGGGCCATCCTGGTCAAGACCCACCGG
GACGTGGAGAGGCTGCTCGCCGACCGCACGCGCCTCGAGGAGCTCCTCCAGATCCAGCAC
GACTTCTGGCTCCGCCACCACGCCGTCCTCAGCGACGGCCTCGACGAGACGCGGAGGGTG
GATGACTGCGTGCAGCGGGGCGACGCGGCCATGCT

Homology of Contig U35_29273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None