- Probe CUST_25539_PI390587928
- Source Contig U35_29282
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_25539_PI390587928 | Hv_44K_v2 | GGCGGGCTCGGCGTCGCCGGCGGCGGCTGGGAGCTGCGGGACGTATTCTTCCGCTCCCTC | 204 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.923 | 1.241 | 0.971 | 0.549 | 1.485 | 1.026 |
Raw | 1250.417 | 1013.664 | 839.390 | 573.137 | 651.014 | 543.669 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC28523 | 264 | 3e-25 | 205 - 264 | 100 | 60 / 60 | plus | |
Harvest35 | U35_29282 | 264 | 3e-25 | 205 - 264 | 100 | 60 / 60 | plus |
Contig Sequence (264 bp)
>U35_29282 264 Hv_44K_v2 GCGCTCTCCTTCGTCGTCTCCATCAGGCCTCTCGTCTCGTCTCAGCATGGATCGGCGGCC GGAGGGCGGCGGGGCGAGGAACGCGCGCGGGAGGAGCCGGACGCGGCGGACTTCCCCTTC GACGAGGCGGTGGCGGCGGCCGACGCCGGGGAGGCGTGGCGGAGGCCGCCGGGGGTGTTC CAGTTCCCGTGGCAGAAGTGCCGCGGCGGGCTCGGCGTCGCCGGCGGCGGCTGGGAGCTG CGGGACGTATTCTTCCGCTCCCTC
Homology of Contig U35_29282 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |