barSeed - Barley Seed Development Database

Probe CUST_25535_PI390587928

Source Contig U35_29285

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25535_PI390587928	Hv_44K_v2	AGCAGTTGAGAATGAAATCGCTGCAAAACAAGTAAAACATATTGATCTGGAGGCCAATCT	438	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.153	1.242	1.330	0.795	0.728	0.516
Raw	14.856	22.373	23.404	17.819	6.454	5.157

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365524	4501	7e-23	2058 - 2117	98	59 / 60	plus	ABC15872
MLOC	MLOC_74275.1	3152	7e-23	1410 - 1469	98	59 / 60	plus	None
MLOC	MLOC_74275.2	4500	7e-23	1509 - 1568	98	59 / 60	plus	ABC15872
JLOC1	JLOC1_49496.1	6299	4e-23	4839 - 4898	98	59 / 60	minus
JLOC1	JLOC1_49495.2	6115	4e-23	1507 - 1566	98	59 / 60	plus
JLOC1	JLOC1_49495.1	4537	4e-23	1509 - 1568	98	59 / 60	plus
Harvest21	ABC28526	501	3e-25	439 - 498	100	60 / 60	plus
Harvest35	U35_29285	501	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (501 bp)

>U35_29285 501 Hv_44K_v2
GAAATATGTAGATGTAGCTGCCGATATCACAGATGCGCCGAAAGAGGTCAGTTCTTTCAG
TATGCTGAAGGAAGCGGTGCATGAAGATGGCACACTGCTAACTGCCAACACCGTTAATTT
GCTAGGAGATAGCAATTCATCCGTTATGCTGGGGGAAGCAATGCATGAGACAGTAACCAC
GAAAGAACTAACTGCCAATGTGCTTGACATAGCTGGAAAGAGTAGCTCATCCACTATGCT
CCAGGAAGATGTCATGACTTCTCTCTGCCAAGAGTCTCAAGAAATTAAAGAAACTGAAAT
AGGAAATGTTGGAGACAAGAAGGTTGATGAAACAACTGAATCTATCGCATCCCAACCAGT
GGAAGGGGGGCTCGAGAGGTATGGTTGTGAAAATAGAGTTGCGCTTGACAAAACTGAAGT
TGTAGAAGAAAAAGAAGAAGCAGTTGAGAATGAAATCGCTGCAAAACAAGTAAAACATAT
TGATCTGGAGGCCAATCTTGT

Homology of Contig U35_29285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None