- Probe CUST_25520_PI390587928
- Source Contig U35_29293
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_25520_PI390587928 | Hv_44K_v2 | TTTGGTTTCTAAGCATCGTGCCACCGGCAGGTGACAGGGCACCTCTGCATTTCCCCCATT | 268 | GeneList: midnightblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.096 | 0.132 | 0.579 | 1.919 | 1.762 | 3.096 |
Raw | 2.992 | 9.054 | 42.745 | 232.389 | 70.155 | 136.158 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_16512.1 | 851 | 7e-23 | 390 - 449 | 98 | 59 / 60 | minus | None |
JLOC1 | JLOC1_11369.1 | 575 | 4e-23 | 313 - 372 | 98 | 59 / 60 | minus | |
Harvest21 | ABC28534 | 386 | 3e-25 | 269 - 328 | 100 | 60 / 60 | plus | |
Harvest35 | U35_29293 | 386 | 3e-25 | 269 - 328 | 100 | 60 / 60 | plus |
Contig Sequence (386 bp)
>U35_29293 386 Hv_44K_v2 CGAACCCCCTACGACGAAATGCGTGCTAGGCTGGTCGCTGCGCCGAGCAGCACGGCGGGC CGGCGGCTCATGCCGCAGCACCAGCGCGGCGCTCCTCCCCGCGGGGCAGCGTGCACAAGT AAGTTGCCGCTCGTGCACGCGCGGTGCGTGCGCCGGCCGCTCTGTCCTGGCTGGCTCGAC GCCACGTCCGGCGTGGCCAGTTCCGGGGAGCACCTCCGCATGAACTCGCAGGCAGCGGTG GCGCATGGCGCGCGCGAGGGGTGTCTGGTTTGGTTTCTAAGCATCGTGCCACCGGCAGGT GACAGGGCACCTCTGCATTTCCCCCATTGGCCGTGGCGTCGTGGTGTCACCTGTGCCGCC GTGCTGCCGCTCGGGCCGTCATGTGT
Homology of Contig U35_29293 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |