- Probe CUST_25508_PI390587928
- Source Contig U35_43594
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_25508_PI390587928 | Hv_44K_v2 | ACTGATACGTCTACAGGAAACAAGTCGTGCTTCTGAGGGTGCAAGCAATCAAAACAAGTC | 40 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 2.909 | 1.625 | 0.926 | 0.467 | 1.035 | 0.685 |
Raw | 33.833 | 24.502 | 15.073 | 11.346 | 9.124 | 6.797 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_37216.1 | 3974 | 2e-24 | 1600 - 1659 | 100 | 60 / 60 | plus | ABC07979 ABC16427 |
JLOC1 | JLOC1_24071.1 | 4022 | 8e-25 | 1516 - 1575 | 100 | 60 / 60 | plus | |
Harvest21 | ABC40464 | 108 | 3e-25 | 41 - 100 | 100 | 60 / 60 | plus | |
Harvest35 | U35_43594 | 108 | 3e-25 | 41 - 100 | 100 | 60 / 60 | plus |
Contig Sequence (108 bp)
>U35_43594 108 Hv_44K_v2 ACCATGACCTTTTAAGGGACCCAGAAGGAGCTTACAGCCAACTGATACGTCTACAGGAAA CAAGTCGTGCTTCTGAGGGTGCAAGCAATCAAAACAAGTCCGGTTGGA
Homology of Contig U35_43594 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |