barSeed - Barley Seed Development Database

Probe CUST_25501_PI390587928

Source Contig U35_1180

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25501_PI390587928	Hv_44K_v2	ACGGACGTGCCTGCGGGCGGTGCTAGTACCACCGACGAATAATAAGTTGTTGCATATCTT	442	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.056	0.314	0.613	1.555	1.689	2.710
Raw	38.250	319.043	597.171	2333.975	878.364	1541.293

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7938.1	1095	2e-24	861 - 920	100	60 / 60	plus	ABC03233 ABC03234
JLOC1	JLOC1_5254.1	1049	8e-25	821 - 880	100	60 / 60	plus
Harvest21	ABC43602	523	3e-25	395 - 454	100	60 / 60	plus
Harvest21	ABC03234	539	3e-25	443 - 502	100	60 / 60	plus	ABC03234
Harvest21	ABC03233	819	3e-25	643 - 702	100	60 / 60	plus	ABC03233
Harvest35	U35_45135	523	3e-25	395 - 454	100	60 / 60	plus
Harvest35	U35_1180	539	3e-25	443 - 502	100	60 / 60	plus
Harvest35	U35_1179	819	3e-25	643 - 702	100	60 / 60	plus

Contig Sequence (539 bp)

>U35_1180 539 Hv_44K_v2
GGTTATCGCATTTCTCAGGTAAGGCTCAGGTTTCGGAGTAGCGAAGCTTTTAAAGTGTGC
ATCTGGCTACCGGCATGGCTGGAGAGCAAGCGTTCCACCGGGGAGGCGTGTACGGAGGCG
GCAGCGCCGTCGGGCCGGACTACATGCGGGCCATCCGCGGCCATAGCGGTGACGATGCTG
ACGGCTGGGTTCGTGTCGTCGGGGGCGTTCGGCGCGGCGGCGGTGGCGGTGCTGGCGTGG
ATGTACAAGTACCTGTCGCACGGGTCGCCCTCGCCGATGGGGGCTGACACGGTGGACCAC
GCGGGCGCGAAGCTGGACTCCAAGGCGCACGACGTGAAGAACTGGGCGCAGCATCGCCTC
GACCAGGCCCGAGCTCCGTAGGCATGTTTTGGTCATTTGCCCTCCTATGTGGTTACCAGT
GTGGATCCACGCCTCTCTATGTACGGACGTGCCTGCGGGCGGTGCTAGTACCACCGACGA
ATAATAAGTTGTTGCATATCTTAAAAAAAAAAATAAAAATGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None