barSeed - Barley Seed Development Database

Probe CUST_25494_PI390587928

Source Contig U35_1187

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25494_PI390587928	Hv_44K_v2	GTGTTAGTAGTGTGTAGGAGTGTGGCAACTCCATGTGGTTTCCGGCCAAGTGATGTTGAA	1017	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.708	3.474	1.080	0.890	0.410	0.247
Raw	15256.200	17337.217	5020.310	6460.517	1043.108	689.479

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358746	1152	2e-24	997 - 1056	100	60 / 60	plus	ABC00079 ABC09962
MLOC	MLOC_78238.1	1029	2e-24	859 - 918	100	60 / 60	plus	ABC00079
JLOC1	JLOC1_52145.1	1024	8e-25	859 - 918	100	60 / 60	plus
Harvest21	ABC00079	999	3e-25	823 - 882	100	60 / 60	plus	ABC00079
Harvest35	U35_1187	1225	3e-25	1018 - 1077	100	60 / 60	plus

Contig Sequence (1225 bp)

>U35_1187 1225 Hv_44K_v2
TCGAGCACTGTTGGCCTACCGGACCGCGCTGGCATTGGGATCGCCCACTGACCGGCGCCA
TGGCCTGCCTTGCCAGAGTCTGCTCCCTCCTGCTTGTTGGCGTCGCCGTCGTCCTGCTCC
TGCCGGGCGCGCACGGGTCGTACAGCAACTGCCCGCCGGGCCATGGCGGCGGCGGCGGCG
GTGGTGGTGATCCTGGACACCACCACCCGCCCCACCACGGCAAGCCGCCCAAGCACCACC
CCGGCCCGCCGTCGGGGCCCAAATGCCCGCCGTGCCACCCGCCTCCCACGCCGCGCCCAC
CGCCGACTCCGCCGTACGGGCCTCCCACGCCACTGCCACCGCCTTACGTGCCGCCCACGC
CGCCCTACACCCCGCCGTCGCCACCGTACATTCCGCCAAGCCCGCCGTACGTGCCACCAA
CGCCACTGCCTCCGCCGTACGTGCCACCATACGTCCCACCGACACCTCCATACACTCCTC
CCTACGTGCCGCCAACCCCGCCATACGTCCCGCCGTCGCCGCCCTACGTGCCACCGACAC
CGCCATACACGCCGCCGTACGTGCCGCCGCCGTCGCCGGGGAGGAAGACGTGCCCGATCG
ACGCGCTGAAGCTGAACGCGTGCGTGGACGTGCTGAGCGGACTGGTGCACCTGGTGATCG
GGCGGGAGGCGCGGAGCAAGTGCTGCCCGCTGGTGCAGGGGGTGGCGGACCTGGACGCGG
CGCTGTGCCTCTGCACCACCATCCGGGCGCGGGTCCTCAACATCAACATCTACCTCCCGG
TGGCGCTCCGGCTGCTCATCACCTGCGGCAAGCACCCGCCCAACGGCTTCCAGTGCCCCA
CCGTCCTCGACGCCTAGCCTAGCCTAGCCTGCATGGCCGCTCTGGCTCGGCTCTCGCCAT
AGCTTTACTACCATACTAGCGTGTGGCGTGGGGTGCTACAGTGCTTGCTCGCTCCAGTGC
TGTGCGTGCCTGCGATTTGTGTGCGTCTCGATCGACCTCGACCGATTTTCTTGTTCCGTG
TTAGTAGTGTGTAGGAGTGTGGCAACTCCATGTGGTTTCCGGCCAAGTGATGTTGAATAA
TTAATTAATTAACATGTGCTATTTAGTAAAAAAAAAAAAAAAAGGTCCGTGTATTGTAAC
GGAAGAAAAAAAATTTATAATTTTCAATTGTGATAATCAAAAAAAAAAAAAAATTAAAAC
ATTTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1187 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None