barSeed - Barley Seed Development Database

Probe CUST_25493_PI390587928

Source Contig U35_1188

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25493_PI390587928	Hv_44K_v2	TTTGCTGCCCAAATGATTGATCTTGGGTTGCCGCATATAGTACAGAATCTGAAAGCTCAA	982	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.564	0.726	1.574	2.196	0.840	0.905
Raw	241.408	487.781	924.425	2104.191	274.584	323.948

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48070.5	992	2e-24	707 - 766	100	60 / 60	plus	ABC03655
MLOC	MLOC_48070.3	1985	2e-24	1122 - 1181	100	60 / 60	plus	ABC03655 ABC23394
MLOC	MLOC_48070.2	1972	2e-24	1101 - 1160	100	60 / 60	plus	ABC03655 ABC23394
MLOC	MLOC_48070.4	2090	2e-24	1227 - 1286	100	60 / 60	plus	ABC03655 ABC23394
MLOC	MLOC_48070.1	1205	2e-24	1095 - 1154	100	60 / 60	plus	ABC03655 ABC23394
JLOC1	JLOC1_30915.2	1963	8e-25	1092 - 1151	100	60 / 60	plus
JLOC1	JLOC1_30915.1	1972	8e-25	1101 - 1160	100	60 / 60	plus
Harvest21	ABC03655	1764	3e-25	983 - 1042	100	60 / 60	plus	ABC03655
Harvest35	U35_1188	1789	3e-25	983 - 1042	100	60 / 60	plus

Contig Sequence (1789 bp)

>U35_1188 1789 Hv_44K_v2
GGTCTCTCTCAGATCTCTTCCCCCCATCGTGTCCAACCTACCTCCTCCCCGTCCTGATCC
TTCCTCCGCTCGCCCATCGGCGCCAGGTGTGGGCGCTCTCAGGGGGGGTGGAGCTTGACC
TGCCGCGATGGATCGCGCCGAGCTCACCACGGAGCAGGTTCTCAAGCGGGACATTCCATG
GGAGACATATATGTCAACTAAACTGATCACTTCGACATGCCTTCAGCTTTTAAGGCGTTA
TGACCACAAACCAGAAAGTCAGAGAGGTCCGTTGCTTGATGAGGATGGACCATCGTATGT
TCATGTTTTTTTGAATATCTTGCGAAGCATCTCTAAGGAAGAGACCGTGGAATATGTGCT
TGCCCTCATTGATGAGATGCTTGCAGCGAATCCTAAACGAGCAGCACTGTTTTACGACAA
ATCTCTCTCTGGTGAAGACATTTACGATCCTTTCCTAAGACTGCTCTTGAAAGGTAACTG
GTTCGTACAGGAAAAGAGCTGTAAGATATTGACTCACTTAATAAGTGCGAGACCTAAGCT
TCAGAACGGCATGGTTCCAAATGGAGAGGCTTCAAATTCAAAGAGCAAGCTTACATCAAT
TCATGATGTGTTAAAGGGCTTGGTTGATTGGCTCTGTTCTCAGCTCAGGAACCCCACCCA
CCCGAACTGTTCTATTCCTACTGCTACCCATTGCCTCGCCACTTTGCTGAAGGAGACATA
TGTTAGAACCTTGTTTGTTCAGGCAGATGGTGTAAAACTGCTCATTCCTTTAATATCTCC
AGCCTCAACACAACAGTCAATTCAGCTCCTCTACGAAACTTGCCTTTGTATATGGCTTTT
ATCCTTCTATGATGCAGCCGTTGATTATTTGTCCACTACAAGGGTTATGCCAAGACTTGT
AGATGTTGTCAAAGGCTCTACTAAAGAGAAGGTTGTCAGAGTTGTTGTGATGTCCTTCCG
CAATTTGTTGGCAAAGGGTGCATTTGCTGCCCAAATGATTGATCTTGGGTTGCCGCATAT
AGTACAGAATCTGAAAGCTCAAGCATGGAGTGATGAGGATTTGTTAGATGCACTGAATCA
ACTAGAAGTGGGTCTCAAAGAGAACCTCAAGAGGTTGAGCTCATTTGATAAGTACAAACA
GCAAGTGCTTCTTGGCCATCTTGATTGGTCTCCAATGCACAAAGACCCAAATTTCTGGCG
AGAGAATATCACTAACTTTGAGGAAAATGATTTCCAGATCCTACGTGTCCTTATGACAGT
CATCGACACATCAACCGACACCACTGCTCTTGCAGTCGCCTGCTATGACCTCTCACAGTT
CCTTCAGTACCACCCTTCTGGCCGCCTAGTGGTGGCAGACCTCAAGGCAAAGGACCGAGT
CATGAAACTCATGAACCACGACAACGCCGAAGTGAGGAAGAACTCCCTGCTCTGCGTGCA
GAGGCTCTTCCTCGGCGCCAAGTATGCTAGCTTCCTGCAGGTGTAAGACCACAAAGTTTT
GTATTTATATGAAGTGTTAGATCCGCCAAATCCCATGCCATTTTTTCAGAATGGTGAAAC
AGTGATTGAGAATGTAAGACCTCTGCAATTTCTTGTCCAGTTTATCTTGCTGTTATTTGA
TTTGATTCATGAACTGGTGTATAATAAATAATCTCAGCTATGGCTTGCTCGATGTAATAA
GATGTCCATGGGCAGTATTTCTCTCCTCCGAATAGTGTTGTCCGAGGAAATAAAGTAAGA
AACACGATTTATGTAAATTGTATACATTATTTTAAAAAAAAAAAAAAAA

Homology of Contig U35_1188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36470.1	316	0.0	protein\|vacuolar ATP synthase subunit H, putative, expressed
Brachypodium v1_2	Bradi1g25220.1	112	1e-65
Arabidopsis v10	AT3G42050.1	441	0.0	vacuolar ATP synthase subunit H family protein \| chr3:14228846-14232228 REVERSE LENGTH=441