barSeed - Barley Seed Development Database

Probe CUST_25492_PI390587928

Source Contig U35_1189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25492_PI390587928	Hv_44K_v2	CGATTTATGTAAATTGTATACATTATTTTCTGGAAACTGATTGGCAGCTTGCTTTGGGCT	1121	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.072	1.993	1.099	0.875	0.416	0.365
Raw	807.327	1201.346	581.954	722.141	122.811	116.194

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48070.3	1985	2e-24	1884 - 1943	100	60 / 60	plus	ABC03655 ABC23394
MLOC	MLOC_48070.2	1972	2e-24	1863 - 1922	100	60 / 60	plus	ABC03655 ABC23394
MLOC	MLOC_48070.4	2090	2e-24	1989 - 2048	100	60 / 60	plus	ABC03655 ABC23394
JLOC1	JLOC1_30915.2	1963	8e-25	1854 - 1913	100	60 / 60	plus
JLOC1	JLOC1_30915.1	1972	8e-25	1863 - 1922	100	60 / 60	plus
Harvest35	U35_1189	1199	3e-25	1122 - 1181	100	60 / 60	plus

Contig Sequence (1199 bp)

>U35_1189 1199 Hv_44K_v2
GGTACAACCAGGATTTGTTAGATGCACTGAATCAACTAGAAGTGGGTCTCAAAGAGAACC
TCAAGAGGTTGAGCTCATTTGATAAGTACAAACAGCAAGTGCTTCTTGGCCATCTTGATT
GGTCTCCAATGCACAAAGACCCAAATTTCTGGCGAGAGAATATCACTAACTTTGAGGAAA
ATGATTTCCAGGTATGTCATGTCCCTTTTTTGAATGGAAATATAATGTTTGTACAATCCA
AAGTGGCCTGTTTTTAATTTGGTCCGGTTCTCTTACACTGAGGCTAATTTTGCAGTTGCT
GAACTGTTCGGTGCTGAATTTATTTGTCGTGAAAAAATAGGCTCAAAAGCAACAAACAGT
TGGTTAGCCAAACAGTTAAAAAACCTGGAATAATTAGTCCTGTTAACTTTTTGTCGGGAA
TGCATATTGTTAAGTATAAATATGCTAGATAAGTAGATAGTGTCTTGATCTAACCCAGCT
GTGTAAATGACACCCAATATGATTCTGTTTTCTATGTTCAAGTTGGCACTATCAAGCTTT
GCCTAATATATTATTCAAAGTGAAATGTTATTTTTCTGTACTTTTTGTGTGGAGTGACAC
CTTCAGTTTTGCAGATCCTACGTGTCCTTATGACAGTCATCGACACATCAACCGACACCA
CTGCTCTTGCAGTCGCCTGCTATGACCTCTCACAGTTCCTTCAGTACCACCCTTCTGGCC
GCCTAGTGGTGGCAGACCTCAAGGCAAAGGACCGAGTCATGAAACTCATGAACCACGACA
ACGCCGAAGTGAGGAAGAACTCCCTGCTCTGCGTGCAGAGGCTCTTCCTCGGCGCCAAGT
ATGCTAGCTTCCTGCAGGTGTAAGACCACAAAGTTTTGTATTTATATGAAGTGTTAGATC
CGCCAAATCCCATGCCATTTTTTCAGAATGGTGAAACAGTGATTGAGAATGTAAGACCTC
TGCAATTTCTTGTCCAGTTTATCTTGCTGTTATTTGATTTGATTCATGAACTGGTGTATA
ATAAATAATCTCAGCTATGGCTTGCTCGATGTAATAAGATGTCCATGGGCAGTATTTCTC
TCCTCCGAATAGTGTTGTCCGAGGAAATAAAGTAAGAAACACGATTTATGTAAATTGTAT
ACATTATTTTCTGGAAACTGATTGGCAGCTTGCTTTGGGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None