- Probe CUST_2548_PI390587928
- Source Contig U35_26253
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_2548_PI390587928 | Hv_44K_v2 | ATAGGGGTGAGTGTACGCACTCGTGTATGTGAGTGACTTTGTTTGTACTCTGCTAAAAAA | 236 | GeneList: darkmagenta MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 4.947 | 3.622 | 1.359 | 0.700 | 0.251 | 0.381 |
Raw | 13410.633 | 15269.397 | 5187.920 | 4195.923 | 528.301 | 864.560 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC23472 | 367 | 3e-25 | 237 - 296 | 100 | 60 / 60 | plus | ABC23472 |
Harvest35 | U35_26253 | 367 | 3e-25 | 237 - 296 | 100 | 60 / 60 | plus |
Contig Sequence (367 bp)
>U35_26253 367 Hv_44K_v2 GGATGGTTAGGAGGACTGTGGTATCCCCTGTCCACCAGAGTTCAAGTCCCAGACTTGACG TTGGTGCTTGCATTTTCCTGGGTTTATTTCAGGTATTCCGGCGAAGTGCTTTCAGTGGAA GGAGACGTTCCCGTCGACAACGAAGGCGTCAGTGACGACTTCGTCAATCTCAAGATGATG TGCCGGCTTAGTCTCTCGAAGGCATTCATAGGGATAGGGTGTGCGTGTGTGCGTTCATAG GGGTGAGTGTACGCACTCGTGTATGTGAGTGACTTTGTTTGTACTCTGCTAAAAAAAAAC ATTCGTTCAGCCTTTCTACCCAGGCTGATCACTCCGTGATAAAAATGTTTAAAAAAAAAA AAAAAAA
Homology of Contig U35_26253 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |