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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25489_PI390587928Hv_44K_v2CATTACCATTGGTTTTTTCTCTTAGCAATATTAGTTGGAAATCTACGCCGTATGTGTGTA620GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8032.4461.5830.8780.3170.295
Raw 241.624511.169280.347249.98430.84131.909



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_2165.18198e-25722 - 78110060 / 60plus
Harvest35U35_198426983e-25621 - 68010060 / 60plus



Contig Sequence (698 bp)

>U35_19842 698 Hv_44K_v2
GAGGCTTCCTTGTTCCAATACAACTGAGAGATCGCACCACCACCGGGGAGAGAGAGAGCC
ATGAGGAGCGGCGGCGGCGGCAGCGACGTCAGGTCCTTCTTCCGGCAGCAGAAGGCCCAC
TCCGACGCGGCGGCCATCAAGCCCACCGGCGGCGTCTCCAAGAAGGCGGCGCAGCACCAC
CAGAGGCAGGCGGCGGCGCGCCCGACACCAGATCACGGCGACGGCGCCGACGCGGGGAGG
GAGGAGGCGGAGAGCACGGAGAGGAAGGCCAGGGAGTTCGACATGGACATGCGCTACGGG
CCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCGACGCGCCGCCGAGCTCGGCCTCGCC
CCGCCGCCGTACGCGCTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAG
AGTCACTGGTCCGCCACTCCTCGTGGTTCTACCTAGTACTGCTTGCTTCTTCGATCTGTA
GCCCTGTGGCCTCTTGAGTTCAGTCAGTCTTGGTGTTGTCTTCAGTCTTCCTCTCTAAGT
TTGTGTCCGTGCGAATGCGATGCTGTATTAATCTCAGTATAATCTTTGCTGCATCAGGTG
TGTTGAGCCAATCTGTATCCCATTACCATTGGTTTTTTCTCTTAGCAATATTAGTTGGAA
ATCTACGCCGTATGTGTGTATAAAAAAAAAAAAAAAAA



Homology of Contig U35_19842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None