barSeed - Barley Seed Development Database

Probe CUST_25481_PI390587928

Source Contig U35_1190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25481_PI390587928	Hv_44K_v2	ATTTTTGGGTGTGCAGTATTTGATCTTGCTACTGTCCTGATTTGGGTCATGCCCTTGAAA	1128	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72880.3	735	7e-23	657 - 716	98	59 / 60	plus	ABC00208 ABC00374 ABC52239
MLOC	MLOC_72880.1	1543	7e-23	1456 - 1515	98	59 / 60	plus	ABC00208 ABC00374 ABC52239
JLOC1	JLOC1_48500.1	1098	4e-23	939 - 998	98	59 / 60	plus
Harvest21	ABC00374	1148	1e-23	1080 - 1139	98	59 / 60	plus	ABC00374
Harvest35	U35_1190	1197	3e-25	1129 - 1188	100	60 / 60	plus

Contig Sequence (1197 bp)

>U35_1190 1197 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGATCCCATTCCCCAAATCCTCCACGCGCACACACACACAC
ACCAGAGACGAAAACACAACCAGCCATGGCGCTCCGCACGTTGGCCACGAAGAGAACCCT
AGGCCTGGCGCTCGGCGGCGCGCGGAGGGGCGTGGCGACGTTCACCCTCCCCGACCTCCC
CTACGACTACGGCGCGCTCGAGCCGGCCGTCTCCGGCGAGATCATGCGCCTGCACCACCA
GAAGCACCACGCCACCTACGTCGCCAACTACAACAAGGCGCTCGAGCAGCTCGACGCCGC
CGTCGGCAAGGGGGACGCGTCCGGCGTCGTCCACCTCCAGAGCGCCATCAAATTCAACGG
CGGCGGTCATGTTAACCATTCAATCTTCTGGAAGAACCTCAAGCCTATCAGTGAGGGTGG
TGGTGAGCCACCTCATGGCAAACTTGGCTGGGCCATTGATGAGGATTTTGGTTCTATTGA
GAAACTTATAAAGAAGATGAATGCAGAGGGTGCTGCTTTACAAGGGTCTGGATGGGTGTG
GCTAGCTTTGGATAAAGAGGCCAAAAAGCTTTCAGTTGAAACTACTCCTAATCAGGACCC
TCTTGTGACCAAAGGCGCAAACCTGTATCCTTTGTTGGGAATTGATGTCTGGGAGCATGC
ATACTACCTGCAGTACAAGAACGTGAGGCCGGACTACCTGACCAACATCTGGAAGGTGGT
GAACTGGAAATACGCAGGAGAGGAGTATGAGAAAGTGCTTGCGTGATTTGATTTGTGAGA
ATGGACAGACAGTACCTCGCTCTTGAGTTTCCGGCTGTTGGATCTTTTGTATATGCAATA
ATAAAATCGGGCAGTACTCCACTGTAGGGGCCCTTCTACTCGTACATTGCATAGAGGTGG
ACTAATGTCTAATGCACAGTACAGTGCCTGCCCTGTCCATTTTGGTACTAGCACTTACGT
ATTACTGTGCATGCGTGTTTAATACAGTCATTCGACTGTCATGTCCTTTGTGCGCACGTA
TTGGTGTGGATGGGTGATAATAATCTGCCCGGCTTTCGATCGTAAAAAAAAAAAAAAGTG
CTGATGTTATCGTGCATGGATTAAGCACCCCAAGCTTACTTTTCACTGATTTTTGGGTGT
GCAGTATTTGATCTTGCTACTGTCCTGATTTGGGTCATGCCCTTGAAAAAAAAAAAA

Homology of Contig U35_1190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g25850.1	232	2e-132	protein\|superoxide dismutase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g30580.1	231	2e-138
Arabidopsis v10	AT3G10920.1	231	5e-117	\| Symbols: MSD1, MEE33, ATMSD1 \| manganese superoxide dismutase 1 \| chr3:3418015-3419581 FORWARD LENGTH=231