barSeed - Barley Seed Development Database

Probe CUST_25480_PI390587928

Source Contig U35_1191

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25480_PI390587928	Hv_44K_v2	GGCCGGCTGTATGTGTATGCAGATGAGGATGGATTCATTAATAGATTTGTTATTAAGTTC	1044	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.599	2.580	0.956	0.940	0.662	0.834
Raw	312.003	356.409	113.690	186.765	44.170	61.361

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13658.1	1398	8e-25	1237 - 1296	100	60 / 60	plus
Harvest21	ABC04604	1122	3e-25	1045 - 1104	100	60 / 60	plus	ABC04604
Harvest21	ABC04603	1595	3e-25	1519 - 1578	100	60 / 60	plus	ABC04603
Harvest35	U35_1193	1595	3e-25	1519 - 1578	100	60 / 60	plus
Harvest35	U35_1191	1127	3e-25	1045 - 1104	100	60 / 60	plus

Contig Sequence (1127 bp)

>U35_1191 1127 Hv_44K_v2
GGATCCGTCCAGCAGCAGCAAGCAACCAGGTTCAGGTTTGATCCTCTAGCCTTTGCGGTT
GCGTCCGTCGATTTGTCTGCCATGGAGGGAGGAGGCGCTCCTTCCGTCCAGGACGTGTGG
GACTGGGAGGTGCTGCCTGACGAACACAGGAGCTTCTACGCCGAGAGCAGGGCTGCATCC
CGTGCCCACGGCAGCGGCGAGGTTCTTGCCGATCACGAAACCGAGGAACCGATCCTGCCT
CCCCCGTCACAAGTGGACGCTGGTAATGTTGACGAGTGTAAGGACATCGGCGTCGACGTC
GTGCCGGCCGAGCCCAGATCAACTAAAGAGGGTAAAGATGAAGAACCCACGGTGACGGAG
CTGCTAGTCTCTGACGGCGACGGGCAGGACAAGTTCCAGGCCTGTGACGACGCCAAGGAG
GTGGACGACGATGGCAAGCAGATGGCTGCGGCAGAGGCAGTGGAATCAGCGCTTCCTCCT
CACGAGTTCGCCGCGGGAGAGGAGGAAGAGGGCAAGAAGGAGGAGGACGGCGCGCCGCCG
GAGTGCGTGGTGTTCAGCGTGGGGAAGCTGCGCGTGAACGCGGTCGGGGCGCTTTGCTCG
TTCGGGGTGGCGGCGGCCACCGTCTGCGTGTTCCTCGTCGGCGGCAGGCTGCAGCACCAC
AAGCAGCACCAGCATCAGCAGCAGCAGAAGATCCAGCTGCAGTTCCTTGGCGATGATAAG
AGAATTCAGCAGGTGGTGCAGCAGACATCGAGGCTGAACCAGGCCATGTCATCTATGATG
GGGGCAGGCGCGTCCACAAGGGCCAACATATCGTTCGGTGGCTTCTACGACGGCTTCTGA
TCCACCCGCCCGCGATTCAACTCTCGGATCAAGCACAAGCTGCTGGATTCAACTACGTAC
ATCTGATGAAGAAAAAGCTAGCTCATGCGTTATAGCAAATCAGCAGCCTTGGTAGTGGTT
GTCATGTACGTATAACATAGATCACGTGTCGTGTTTGTACATAATGCACGATATACTGGG
TGTAAATAATTGGGACCGTGGCCGGGCCGGCTGTATGTGTATGCAGATGAGGATGGATTC
ATTAATAGATTTGTTATTAAGTTCAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1191 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g54440.1	241	2e-67
Arabidopsis v10	None