barSeed - Barley Seed Development Database

Probe CUST_25478_PI390587928

Source Contig U35_1193

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25478_PI390587928	Hv_44K_v2	AAGTAATACATATGCTGTTGATCTGTGGATGTGCAGAGAATTCAGCAGGTGGTGCAGCAG	1158	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19711.1	1880	2e-24	335 - 394	100	60 / 60	minus	ABC04603 ABC04604
Harvest21	ABC04603	1595	3e-25	1159 - 1218	100	60 / 60	plus	ABC04603
Harvest35	U35_1193	1595	3e-25	1159 - 1218	100	60 / 60	plus

Contig Sequence (1595 bp)

>U35_1193 1595 Hv_44K_v2
GCAAGCAACCAGGTTCAGGTTTGATCCTCTAGCCTTTGCGGTTGCGTCCGTCGATTTGTC
TGCCATGGAGGGAGGAGGCGCTCCTTCCGTCCAGGACGTGTGGGACTGGGAGGTGCTGCC
TGACGAACACAGGAGCTTCTACGCCGAGAGCAGGGCTGCATCCCGTGCCCACGGCAGCGG
CGAGGTTCTTGCCGGTAAGCTCGCTCTTGATCACGATTTTTTTTACTTCGGTTTCCACTC
ATGTTCCAATCCCTGTATTTGTAATTGTAACTGTAATTGATTGCGTGCGTACTCCAGATC
ACGAAACCGAGGAACCGATCCTGCCTCCCCCGTCACAAGTGGACGCTGGTAATGTTGACG
AGTGTAAGGACATCGGCGTCGACGTCGTGCCGGCCGAGCCCAGATCAACTAAAGAGGGTA
AAGATGAAGAACCCACGGTGACGGAGCTGCTAGTCTCTGACGGCGACGGGCAGGACAAGT
TCCAGGCCTGTGACGACGCCAAGGAGGTGGACGACGATGGCAAGCAGATGGCTGCGGCAG
AGGCAGTGGAATCAGCGCTTCCTCCTCACGAGTTCGCCGCGGGAGAGGAGGAAGAGGGCA
AGAAGGAGGAGGACGGCGCGCCGCCGGAGTGCGTGGTGTTCAGCGTGGGGAAGCTGCGCG
TGAACGCGGTCGGGGCGCTTTGCTCGTTCGGGGTGGCGGCGGCCACCGTCTGCGTGTTCC
TCGTCGGCGGCAGGCTGCAGCACCACAAGCAGCACCAGCATCAGCAGCAGCAGAAGATCC
AGCTGCAGTTCCTTGGCGATGATAAGGTTTGCTGACTCTGTCGCCACCTAATCCGATCCA
GAGCATCAGAATCCTTTTCCTATTAGTAATAACTCAACTTAAATCAATTACAATATCAAT
CAACTATGCCTTTTTTCTCCCGAGAAACACCGTACACACTCACATACACGAACTCCCTGT
CTCTATGACTATGAGCACCTTCAGTAGATTGAGCCGACAGATATCCGATTGACGAAGTCT
GTCACAGACGCATGGTGCACGGCCTAATTGGACCCATTCCAACACCGCAGTCCGCAGTTT
TCTTCCCGGATTTGACCGCCATCCGCTTCTTGTGGAACTGAATCTTGAAATATTATTTGT
CCAAGAGAAGACTGGCTGAAGTAATACATATGCTGTTGATCTGTGGATGTGCAGAGAATT
CAGCAGGTGGTGCAGCAGACATCGAGGCTGAACCAGGCCATGTCATCTATGATGGGGGCA
GGCGCGTCCACAAGGGCCAACATATCGTTCGGTGGCTTCTACGACGGCTTCTGATCCACC
CGCCCGCGATTCAACTCTCGGATCAAGCACAAGCTGCTGGATTCAACTACGTACATCTGA
TGAAGAAAAAGCTAGCTCATGTGTTATAGCAAATCAGCAGCCTTGGTAGTGGTTGTCATG
TACGTATAACATAGATCACGTGTCGTGTTTGTACATAATGCACGATATACTGGGTGTAAA
TAATTGGGACCGTGGCCGGGCCGGCTGTATGTGTATGCAGATGAGGATGGATTCATTAAT
AGATTTGTTATTAAGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None