barSeed - Barley Seed Development Database

Probe CUST_25476_PI390587928

Source Contig U35_1195

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25476_PI390587928	Hv_44K_v2	ACGGAAAGACATCCTGCACTAGGATTTAATCATTGGTGATAATACTGTTGCTCAATGCAA	490	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.461	2.142	1.278	0.751	0.346	0.434
Raw	1848.627	2578.928	1327.064	1213.349	196.386	268.051

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55271.1	3229	2e-23	20 - 77	100	58 / 58	minus	ABC21628
JLOC1	JLOC1_35637.1	3357	1e-23	3267 - 3324	100	58 / 58	plus
Harvest21	ABC21628	660	4e-24	569 - 626	100	58 / 58	plus	ABC21628
Harvest35	U35_1195	608	3e-25	491 - 550	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_1195 608 Hv_44K_v2
AAGTATGGCAAGGCATTGGCTTTCCTCCAAGAACAAGAAAGCGCTTTTAAATGTGGGCAG
CTGGGAAAAGGCAAAAAAAGGAGGAGGTGATAAGTTGATCATGTTGCCGCCGCAGTTACG
TTCGTCCACTCCCTTCCTGTGCGCTGGAGATAGAAACAGGCATGCCCCTGGTGACCTCGT
CATGCCCCATTTTAACCGCCTTTTTGCCACTTCATGGCCACACACCGGAATACAAGAGTG
ATCATATGAAATGCGTGAAACACTTCACACAGCGTCATCTTCGACCAAATACTGATGCGG
ATGGAGGTGTTATGTTTATTGCACTCAGGAGTAGAGTTGCTCTAGAGTGCTGCAATAGTA
GTAGTAATCTAATTTAGCGCAGGAAGCGATTTTGTTGTTATTTTCTTCCAGATTTCTTGT
ATGCGCTGTTACTCTTGAGATGCATCTGAACCGACACAATCCTTTTCGTCTCGTCGTTTT
TCCCAAATTGACGGAAAGACATCCTGCACTAGGATTTAATCATTGGTGATAATACTGTTG
CTCAATGCAAAAAAAAAAAAAAAGAGTGATGTGTGGCCCTTTTTGGCAAAAAAAAAAAAA
AAAAAAAA

Homology of Contig U35_1195 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None