barSeed - Barley Seed Development Database

Probe CUST_25471_PI390587928

Source Contig U35_19850

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25471_PI390587928	Hv_44K_v2	TTCTATGATGATACTGCACTCCCAAAGCTGGTGGCTGATTTTGCTTCCCTTGAGCTTTCT	1591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362368	2285	2e-24	2144 - 2203	100	60 / 60	plus	ABC11912
MLOC	MLOC_60591.2	3821	2e-24	3513 - 3572	100	60 / 60	minus	ABC06105 ABC11912
MLOC	MLOC_60591.6	3862	2e-24	1516 - 1575	100	60 / 60	minus	ABC11912
MLOC	MLOC_60591.5	4015	2e-24	1551 - 1610	100	60 / 60	minus	ABC11912
MLOC	MLOC_60591.3	5905	2e-24	3463 - 3522	100	60 / 60	minus	ABC06105 ABC11912
MLOC	MLOC_60591.4	5897	2e-24	3455 - 3514	100	60 / 60	minus	ABC06105 ABC11912
JLOC1	JLOC1_39532.2	6129	8e-25	2523 - 2582	100	60 / 60	plus
JLOC1	JLOC1_39532.1	5165	8e-25	1567 - 1626	100	60 / 60	plus
Harvest21	ABC11912	1678	3e-25	1592 - 1651	100	60 / 60	plus	ABC11912
Harvest35	U35_19850	1679	3e-25	1592 - 1651	100	60 / 60	plus

Contig Sequence (1679 bp)

>U35_19850 1679 Hv_44K_v2
CGCGATATCGGCGGCGCACGACATGGTGGCCATCGGCCCGCCGCCCAAGCTCGGAGAGTT
CTACGACTTCTTCTCCTTCGCCCACCTCACCCCGCCCCTCCACTTTATCAGGAGGAAGGA
GAGGAATGGGGCTGCCCAGGACGGCGATTACTTCGAAATCGAGGTGAAGGTTTGCAACGG
GAAGCTTCTGCACATAGTTGCTTCGGCCAAGGGATTCTACCTGGTGGGCAAGCCGCACAC
CGTAAGCCGGTCCTTGGTGGACCTGCTACAGCAGCTCAGCAGTGGATTTGCCAATGCGTA
CGAGGCACTGATGAAAGCTTTTGTGGATCACAACAAGTTTGGGAATCTGCCATTCGGCTT
TCGTGCAAACACATGGCTTGTTCCTCCTGTATATGTGGATTCTGCTACGAAGAGCCCAGC
TTTGCCCGCTGAGGATGAGAACTGGGGTGGGAATGGAGGTGGCTGCGGACGAGACGGAAA
ACATGACCGGAGACGCTGGGCAAGAGAATTTTCTATTTTGGCTAGAATGCCGTCCAAGAC
TGAGGAAGAGAGGGTGATCAGAGACCGGAAGGCTTTCCTTTTACACAACCTGTTTGTAGA
TACAGCGATTTTCAGAGCTGCGTCGACAATACGGCGACTGGTTGATACTAGTCCGCAAAC
TGGTCCGAATGGTTCGTTACTACTTGAGGAACGTGTTGGGGACCTGCATATAATTGTAAA
GAAGGATGAGGCTGATGCTAGTTTGAAGTTGGAGGACAAAGTTGACGGAGTTGCCATCTA
CCAGACGGATGCTATGGATATATCACAAAGAAATCTTCTCAAAGGTTTAACTTCTGATGA
GAGTGTCGTTGCTAAGGACTCTTCCACGCTAGGTGTGGTGATTGTTAAGCATTGCGGATA
TACGGCAATAGTGAAAGTTTCGGGACGCACAAAGAACAGCAGCGATGGCAAACAAACCAG
TGATATCTCTGATCATCTTGATGAAATACCTAACATCGATGTGGATGATCATCCAGATGG
AGGTTCTAATGCCTTGAATGCTCACAGTCTAAGAATACCACTGCCGAAAATTACCAACCC
AGAAATCGCTGCCAGTAGCCAGCACCTTGCATCTAAACCACATGTTGATAATTATGCGAG
GAAACTAGCATGTACGGTACTTGAAACCAGCTTGAGGAAGCTGGGGAACACCCCGAACAA
AAATCCTAGACGTATCAGGTGGGAACTTGGGTCCTCCTGGCTCCAGCACTTGCAGAAAAA
AGATGCTTCCGTTTCTGAGGACAGTGAGAAGAATGCAAAAAAATCTGAAAAAGATTCATC
TGTCAAAGGTCTCGGCAAGCACTTTGAACAATTAAGAAAAATTAAAAAGAAAGAAAGCAC
TACTGAAGATGCTAAGACTGAGAAGGAAGAATCTGATAGCAACTGCCTGACAAATGGTAT
GGAAAAGTCTGAAAATGTAGCAGTTACCGAAACCAATATGGAGACTGAAATAAGGAACCT
GATTACAGAGGATGCTTTCTGCCGCTTGAAGAGTTTGGAAGCTGGCCTTCATCAAAAGTC
CCTTGAAGAGCTCACAATGATGGCCCATAAGTTCTATGATGATACTGCACTCCCAAAGCT
GGTGGCTGATTTTGCTTCCCTTGAGCTTTCTCCACTGGATGGAAGAACGATGACTGATT

Homology of Contig U35_19850 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55230.1	1721	0.0	protein\|tetratricopeptide repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g23890.1	1711	0.0
Arabidopsis v10	AT4G28080.1	1819	1e-148	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:13948993-13957840 REVERSE LENGTH=1819