barSeed - Barley Seed Development Database

Probe CUST_25461_PI390587928

Source Contig U35_19860

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25461_PI390587928	Hv_44K_v2	TCTTCCCGGATCTCGCTTTAATAGAGCACTGTGAAGAGAAGTGCCAAGTTCTCTTCCAAA	1380	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.095	0.384	0.988	1.578	1.095	1.499
Raw	4.394	38.890	82.320	198.041	51.137	76.078

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8775.1	1768	5e-22	1620 - 1677	98	57 / 58	plus
Harvest21	ABC12178	1454	3e-25	1381 - 1440	100	60 / 60	plus	ABC12178
Harvest35	U35_19860	1454	3e-25	1381 - 1440	100	60 / 60	plus

Contig Sequence (1454 bp)

>U35_19860 1454 Hv_44K_v2
GTCCATCCCAAGGCTTGAAGCCGAAGCCGAAGCCGAAGCCTCCGGTGCTGCGTCCCGTAG
ACCTCCCTGAGGTTTCGTGCGGCGTCGGTCGTTCGCCTGCAAGCAAGCAAGCAAGCAATG
GGGTGTAAGGCGTGCGAGAAGCCCAGGCCGAGCTACCGGAAGGGGCTGTGGTCGCCGGAG
GAGGACCAGAAGCTCCGCGATTACATTCTCCGGCACGGCCACGGCTGCTGGAGCGCGCTT
CCCGCTAAAGCCGGGCTCCAGCGGAACGGCAAGAGCTGCAGGCTGCGGTGGATCAACTAC
CTGCGGCCGGGGCTGAAGCACGGCATGTTCTCGGCGGAGGAGGAGGAGACGGTGATGAGC
CTCCACGCCGCCCTCGGCAACAAGTGGTCGAGGATCGCACGGCATTTGCCGGGGAGGACC
GACAACGAGGTCAAGAACTACTGGAACTCCTACCTCAAGAAGAGGGTCGAGGGCGGCAAG
GGAGCGCCCAACTCGCCCGCGCCGGCGGCGGCGAGCTCCGCCGCGGACTCAGACGGGTCT
CAGAGCCCGAGCCCAGGGGAGGTTATTAGTACGGTGCAGGAACGGGCCAGCCGGCCGTCG
AACTCCGCCGGCTCATCGGAGCCGCCGCACGAGTCGTCGTCGGCCGACTCGAGCTGCCTG
ACCGTGACCGAGCCTCCTGCCTGCAGGGCCTACGCGCCCGTGGCTCCCAAGGTGATGTTC
GCAGATTGGCTCAACATGGACTACATCGGTGGCCAGATGGGGGCGGCGGCGGCGGCAGCA
CCTGGTCCGGAAGCTGCGGGGGTGGTTGGTGCGGGTGCGGGTGCGGGTGCAGGAGGCGGC
GGCGATCATTGTCAGGTGATGAGCCAGGGGTCATCGGCGCAGGTCGATGGGCCACCCGGC
GTGGAGGATTCCCTGCACGGCGGCTTCGGCGACAACGGCACCTGCTGGGAGTTCCTGGAG
CAGTTCGACAGCATGGATCAGATGCAGGTGGGCGGCGGCGGCGGCTTCTGCGACCTGCTC
TCCATGACCGAGTTCTTCGGACTCAACTAGGGCGTGCATCGCCAAGGGAGAAGGAGGAGG
AATATAGAGTTTCTTGGATTTGTTAGACGTTTCGTCAGGTTATTAAGAGGCGCGTTTGTA
ATGCTGCTGCAGTGTAAATTATGGCCGTCTATGTATGCGTAGAGCAATTTGACAGCGTAT
ATATATACATACATATTTATATATATGCAGGTGCATGTGCAGTGCAACGCTGTCCGCCTA
GCTTGGCTCGGAGAGTAGAGCACCGACAGTAAGATGGAAAGGGTTCAAGAAGAATGCACA
TGTTGTTGTTCATTTGATATACTAGCTCCTACTAGTAGTTACTAGTAAGACTTAATATTA
TCTTCCCGGATCTCGCTTTAATAGAGCACTGTGAAGAGAAGTGCCAAGTTCTCTTCCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_19860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42850.2	318	1e-121	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi3g49970.1	307	1e-138
Arabidopsis v10	AT5G52260.1	268	2e-56	\| Symbols: AtMYB19, MYB19 \| myb domain protein 19 \| chr5:21220165-21221223 FORWARD LENGTH=268