barSeed - Barley Seed Development Database

Probe CUST_25453_PI390587928

Source Contig U35_19868

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25453_PI390587928	Hv_44K_v2	AACTGCGACATTCGAGCGAAGCTGGCGGCTTTGGAGATCATGCAGAACTACTACCCGGAG	669	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.556	0.375	0.381	2.194	3.519	5.813
Raw	4.550	2.671	4.371	60.164	29.414	53.180

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250529.1	940	2e-24	555 - 614	100	60 / 60	plus	None
MLOC	MLOC_4645.2	1047	2e-24	578 - 637	100	60 / 60	plus	None
MLOC	MLOC_4645.1	1211	2e-24	819 - 878	100	60 / 60	plus	None
JLOC1	JLOC1_2921.1	1233	8e-25	644 - 703	100	60 / 60	plus
Harvest21	ABC23270	625	3e-25	530 - 589	100	60 / 60	plus
Harvest35	U35_19869	906	3e-25	473 - 532	100	60 / 60	plus
Harvest35	U35_19868	765	3e-25	670 - 729	100	60 / 60	plus

Contig Sequence (765 bp)

>U35_19868 765 Hv_44K_v2
GCAGACAGCCCTTGCACAGCACAGCTAGGCCGCACCCATCTCTTTCTTCATACTCTGTCC
AGCCAGCCAGACTCCTCTACCGCTATAAAATCGAGAGCCTCCCGAGCGAGCGAGCCACTC
TCTCTATCTACTTGGTTTTGCTCCTCTCGAATCGCGGCAAGGCAATCAACCGAGGAAGGA
GGCCGGGGGAGCGGCATGGACTGCGGCGGTGAGGAGCAGGCGAGGCAGAACGGCCATGGC
GGCGACCCGGCGGAGTGGAAGAAGGTGGCCGAGCTCCGGGCCGTGGTGGAGGCGCAGGAC
CCCGCAGCCAAGGAGGAAGACGACTTCATGCTACGGCGGTTCTTGCGTGCCCGGGAGCAA
AACATCAACAAGGCATCGTCGATGTTCCTCAAGTACCTGAGTTGGAAGGGCACCGCCAAG
CCGCATGGCTCCATCACCGAGGCCGAGGTGCGCGGCGAGCTCGTGCAGGACAAGCTCTAC
GTGCAGGGCTTCGACAAGGTGGGGCGCCCCATGATCTACCTCTTCGGCAACCGGCACTTC
GCCGCCAAGCGCGACCTCGAGGAGTTCAAGCGCTATGTCGTCTACATCCTCGACAACACC
TGCACCAAGTTGCCGGCGGGGCAGGAGAAGTTCGCGTCGGTGGTGGACCTCAAGGGGTGG
GGGTATGCCAACTGCGACATTCGAGCGAAGCTGGCGGCTTTGGAGATCATGCAGAACTAC
TACCCGGAGCGGCTGGGACGGGTGTTCCTGATCCACGTGCCATAC

Homology of Contig U35_19868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63370.1	262	2e-88	protein\|CRAL/TRIO domain containing protein, expressed
Brachypodium v1_2	Bradi1g01630.1	253	4e-104
Arabidopsis v10	AT1G01630.1	255	3e-63	Sec14p-like phosphatidylinositol transfer family protein \| chr1:229206-230675 FORWARD LENGTH=255