barSeed - Barley Seed Development Database

Probe CUST_25451_PI390587928

Source Contig U35_19870

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25451_PI390587928	Hv_44K_v2	AACCAAGTTACATGTTCAGGAGTTTTGATAGAAGTGACTGATTCGGCTTCGGATAAAAAA	909	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.642	1.728	1.006	0.908	0.529	0.746
Raw	201.434	328.916	166.798	235.025	47.845	74.664

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13456.1	1728	9e-22	1438 - 1492	100	55 / 55	plus	ABC12960
MLOC	MLOC_13456.2	1288	9e-22	983 - 1037	100	55 / 55	plus	ABC12960
MLOC	MLOC_13456.4	1148	9e-22	843 - 897	100	55 / 55	plus	ABC12960
JLOC1	JLOC1_9114.1	1468	5e-22	1167 - 1221	100	55 / 55	plus
Harvest21	ABC12960	980	3e-25	910 - 969	100	60 / 60	plus	ABC12960
Harvest35	U35_19870	980	3e-25	910 - 969	100	60 / 60	plus

Contig Sequence (980 bp)

>U35_19870 980 Hv_44K_v2
TGCAGGCAATTCGTCACGAGGGCTTTTTGATGAAAAGCGCCGGGCTATGGGCTTAGGCAT
TGCTACCAGAAGAGCTCCCCACATGGCATTTCTGGGCAATCCAGGAACAGGTAAAACATT
GGTTGCTCGGATTCTTGGAAAGCTCCTACATATGATTGGGATTCTCTCTACTGACAAAGT
TACTGAAGTTCAGCGAACTGATCTTGTCGGAGAATTTGTGGGGCATACTGGACCAAAGAC
GAGGCGGAAGATAGAAGACGCCGAGGGAGGGATTCTGTTCGTGGATGAAGCTTACAGGTT
GATACCAACGCAAAAATCGGATGATAAGGATTATGGTTTGGAGGCACTGGAGGAGATAAT
GTCTGTGATGGACAGTGGCAAAGTAGTTGTCATATTTGCTGGGTACTGCAAGCAAATGAA
GCGTGTCATTGCGTCGAACGATGGTTTCTGTAGGAGGGTCACGAAGTTCTTTTATTTTGA
TGATTTCACCACGACAGAATTAGCGGAGATATTGCTTCTGAAGATGAATAGCCTGACTGA
CACTAGTTTGCTTTACGGGTTCAGGCTGCACCAGAGCTGCACCAGAGGTGCTGTTGGAGA
GCTGATTGCCAGGGAAACTACTGAGGAGTGGCTTAAACAGATGAACGGAGGTCTGGTAGA
CACACTTCTTGTCAATGCACGTGAAAACTTGGATCTTCGTCTTGATTTCAGTTGCAATGA
CGCTGAGACCATGATCACAATCACATTGGAAGACCTGGAAGCAGGCCTAAGGCAGATCTC
GAGACAGCGACATTTGCGGTGACCCCTCCTAGGAGGATTGTAACATAAACTCTACCTTTT
CAATACAAAGAAACGCATGAATGTCACTGCGTTTTCTCGAAAACAATCAGGAACATTTTT
TTCTTGACAAACCAAGTTACATGTTCAGGAGTTTTGATAGAAGTGACTGATTCGGCTTCG
GATAAAAAAAAAAAAAAAAA

Homology of Contig U35_19870 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g16660.2	348	3e-144	protein\|cbxX, chromosomal, putative, expressed
Brachypodium v1_2	Bradi3g09890.1	484	5e-143
Arabidopsis v10	AT3G24530.1	481	6e-124	AAA-type ATPase family protein / ankyrin repeat family protein \| chr3:8945678-8947786 REVERSE LENGTH=481