barSeed - Barley Seed Development Database

Probe CUST_25448_PI390587928

Source Contig U35_19873

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25448_PI390587928	Hv_44K_v2	TCGCGGTTATTTGGAAGTGTTTGATGGCAAATTTATGTGGCAAATTTGTCAATGACCGAA	625	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.514	0.945	3.556	3.396	0.848	1.191
Raw	3.304	13.441	49.423	71.176	5.572	9.776

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7057.2	3172	2e-24	674 - 733	100	60 / 60	minus	ABC12317
JLOC1	JLOC1_4650.2	3152	8e-25	669 - 728	100	60 / 60	minus
JLOC1	JLOC1_4651.2	3004	8e-25	2275 - 2334	100	60 / 60	plus
JLOC1	JLOC1_4651.1	2941	8e-25	2212 - 2271	100	60 / 60	plus
Harvest21	ABC12317	700	3e-25	626 - 685	100	60 / 60	plus	ABC12317
Harvest35	U35_19873	700	3e-25	626 - 685	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_19873 700 Hv_44K_v2
GCTCTGTCCGTGTACTGGCTGGTGCCGCAGTACGCACTGCACGGGGTGGCCGAGGCATTC
AACTCTGTGGGGCACCTGGAGTTCATGTACGACCAGGCGCCCGAGAGCATGCGGAGCACG
GCGACGGCGCTCTTCTGGCTGTCCATCTCCCTGGGCAGCTACGTGAGCACGCTGCTCATC
ACCATCGTGCACCGGTGGAGCGCCGGTTCCGACGGATCCAACTGGCTCCCGGACAACATC
AACCGCGGCAAGCTGGACTACTTCTACTGGGTCGTGACGCTGCTGCAGGTCATGAACCTG
GTGTACTACCTTATATGTGCTAGGCAGTACACGTACAAGCCCGTACAGCTCTACAAGGAA
GAGGATGGGGAGGACAAGTCCATGGTGGAGCTGCAACAGAAGGTTTGAGCGAGTAACACT
ATGCAATGTAGTGTGATGTATCAGTGTATGCAGGTACTGGCCTAGCTAGCTAGAAGAAGG
TTGTGAAGATGGATGTGAATGTGTATATGCCATTCAGGGTTTGTATGGAGATCAGGAACA
GAGAAATGTATCTAGCTCACTGGCAAGTTGAGCTAATACCAGGTTTCTACGAATGTGTAA
CTCTGCTTGTTATGTTCGTAGTTGATCGCGGTTATTTGGAAGTGTTTGATGGCAAATTTA
TGTGGCAAATTTGTCAATGACCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g15370.1	598	1e-68	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi1g43970.1	587	3e-75
Arabidopsis v10	AT1G68570.1	596	2e-58	Major facilitator superfamily protein \| chr1:25746811-25750110 FORWARD LENGTH=596