barSeed - Barley Seed Development Database

Probe CUST_25447_PI390587928

Source Contig U35_19874

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25447_PI390587928	Hv_44K_v2	CTTGTTGCATCTTGATACACCAACCTACCTACCTAAAGATTTACCGTTGGAGTCAAAAAA	1071	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.955	1.680	1.412	1.053	0.426	0.543
Raw	232.116	642.142	463.652	564.244	76.557	106.915

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65380.1	3488	3e-21	83 - 136	100	54 / 54	minus	ABC17578
JLOC1	JLOC1_43019.1	3568	2e-21	3330 - 3383	100	54 / 54	plus
Harvest21	ABC17578	1116	3e-25	12 - 71	100	60 / 60	minus	ABC17578
Harvest35	U35_19874	1142	3e-25	1072 - 1131	100	60 / 60	plus

Contig Sequence (1142 bp)

>U35_19874 1142 Hv_44K_v2
TGGATAGTCCCCAATCCAGGGATCTTCCTGCTGAAGACAATGTGATTTCCCGCACACCGA
GTTTACCACGTCGTGATCAATGTGGATTCTCACCATCTGAAGGTTCTGGAATAGGAAGCA
GAAGTACCCGTTCTGAACATGAAAAGGTTGTACTGTTAACTGAAACTTGCAAACAGAACT
CAATCAAAGATGTATGTGTAGCAAATGAGATGCACTCTTCGGACAACGAGTTTGATGATC
CTGATTACACACAAGATGTATTAAATGTACCACAAGATTCTGGCCACATCAGGGCGACAA
AGGCGGGTGATTCATTTTTCTCAAATCTTATAAAAAAAAGCTTCAAAATGAACAATGGAA
CACGCAATGGAAGAGCAAGAGTTTTTGTAAACGGTTTCCCTATCCCAGACCGTGCGGTCA
GGAAGGCTGAGAAGCTAGCTGGACCAATATATCCTGGTGATTACTGGTATGACTACCGTG
CTGGGTTCTGGGGTGTTGTCGGTCAGCCCTGCCTTGGCATGATACCTCCTTATATTCCAG
AGTTTAATTACCCTATGCCCAAGAGTTGTGGTGGTGGAAACACTGGCATATATATTAACG
GAAGAGAACTCCACCAGAAGGATTTGGATTTACTTGTATCCCGAGGACTCTCTGATTCCC
CTGAAAGATCTTACATAGTTGAAAATTCTGGGAAAGTTACAGATGAAGCATCTGGCGAAG
AGCTTTATGGCCTTGGCAAGCTTGCACCAACCGTCGAGAAACTGAGGCGCGGATTTGGTA
TGCGAGTCCCCAAAGTTATCGTGACGGGCCAGCACGGTACAATCATAACCCACGGGTAAG
CTCGGGGATAAACCGGTGGCGTAGCTGCATCCAAGAACATAGAGATCTGAAGATCAATGG
TGGCAGATCTGATTTCCGGAATTTGTTTTCAACTTGAGCCTATGGTGGACGTGGCCTCCT
AGTTCGTGTGCTTGTTGGATTGTTCATGTGAGGCCTCCTATAGAGGCGTGCTTGTAATTT
TCTACCTAGCTAGACGTTTTGAGTGAAAAGCTCGTCGATTTTGTTTGTTTGCTTGTTGCA
TCTTGATACACCAACCTACCTACCTAAAGATTTACCGTTGGAGTCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_19874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g33320.1	812	4e-155	protein\|extra-large G-protein-related, putative, expressed
Brachypodium v1_2	Bradi1g38390.1	824	2e-168
Arabidopsis v10	AT3G61670.1	790	3e-74	Protein of unknown function (DUF3133) \| chr3:22819052-22821870 FORWARD LENGTH=790