barSeed - Barley Seed Development Database

Probe CUST_25443_PI390587928

Source Contig U35_19878

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25443_PI390587928	Hv_44K_v2	AAGAAGACGAAATGGTGTCCAGCTCCTGACTGTACATGTGCAGTGGAATTTGTTAGTGAT	877	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.678	0.812	1.574	1.560	1.016	0.992
Raw	53.275	89.305	166.992	248.152	59.652	62.774

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251223.1	2235	2e-24	792 - 851	100	60 / 60	plus	ABC09899 ABC44480
MLOC	MLOC_20897.1	2166	2e-24	687 - 746	100	60 / 60	plus	ABC09899 ABC44480
JLOC1	JLOC1_14487.2	2215	8e-25	697 - 756	100	60 / 60	plus
JLOC1	JLOC1_14487.1	1784	8e-25	266 - 325	100	60 / 60	plus
Harvest21	ABC12018	937	3e-25	878 - 937	100	60 / 60	plus
Harvest35	U35_19878	937	3e-25	878 - 937	100	60 / 60	plus

Contig Sequence (937 bp)

>U35_19878 937 Hv_44K_v2
AGAAAACCCAGCATCACCTCGGTGCCGCTGCCGACTCGCCCACGCAACTCCATCGGTCTC
GCACATCTTCCTCACCGCCTCCTACCCCGCCCGCCCCGCCCCGCCCACCTCGCCGGAACC
CTACCTCCTACCCGGTCGCGCCCCCGGCCACTTCCGCCCGATCCGCCGATCGTCAGATTT
GGCAAACGCAATGGACTCCGACTCCGAGATGGCCGTCGCCAGCGACGAGGAGATGGTGGA
CGACGAGGACTACTACTACTGCAGCGACGAGGGTGAGTGCGACGACGGGGACGCCAGCGG
CGGCGCCGCCTCCGGCGAAGAGGATTTATTGGCCGGAGGCTACGAGGGCCAGGAGGCCGA
GGGGAGCGACGAGGCCGTCTCCAGGCGCGAGCAGAGATACATTGTTTTAACTGAAAAGGA
TATATCTGAACGCCAAGAGGAAGATATAAGTGAGGTATCTGCATTACTGTTCATTCCAAG
GGAAGAAGCATCTGTCCTTCTTCACCACTATAAATGGGACATCAGCAAGCTGAATGATGA
ATGGTTTTCTGATGAAGAAAAAGTCCGTGGTATTGTTGGCTTACTTATGAATGGAACTGA
TTTTCATAATTTGAGGAAGCTAACTTGTGGAATATGTTTTGAAGGGTACTCTTCAGATAT
GATGAGTTCTGCGGGTTGTGCTCATTTTTATTGCCATGAATGTTGGGAAGGTTATATCAG
CGCTGCTGTAAGTCAGGGTCCGGGATGTTTGTCATTGCGATGCCCTGATCCATCATGCAG
GGCTATCGTTCTTGAAGGCATGATTAACAAATTAGGCAAACACGAAGATAGAGAAAAGTA
TGCACGATTTGCCTTGCGTGCATATGTGGAAAGTGGCAAGAAGACGAAATGGTGTCCAGC
TCCTGACTGTACATGTGCAGTGGAATTTGTTAGTGAT

Homology of Contig U35_19878 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g42740.6	442	2e-118	protein\|IBR domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g41760.1	599	1e-116
Arabidopsis v10	AT1G65430.1	567	2e-67	\| Symbols: ARI8, ATARI8 \| IBR domain-containing protein \| chr1:24301165-24306159 REVERSE LENGTH=567