barSeed - Barley Seed Development Database

Probe CUST_25442_PI390587928

Source Contig U35_19879

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25442_PI390587928	Hv_44K_v2	CAAGCATATTGCGCCTCCTTTACCAAGTGCAGTGGTGATACCAATACCTATACCTCCTTA	620	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376112	2603	2e-24	641 - 700	100	60 / 60	plus	ABC05760 ABC13204
MLOC	MLOC_6007.2	2232	2e-24	790 - 849	100	60 / 60	plus	ABC05760 ABC13204
MLOC	MLOC_6007.1	2558	2e-24	947 - 1006	100	60 / 60	plus	ABC05760 ABC13204
JLOC1	JLOC1_3903.1	2818	8e-25	815 - 874	100	60 / 60	plus
Harvest21	ABC13204	1160	3e-25	621 - 680	100	60 / 60	plus	ABC13204
Harvest35	U35_19879	1160	3e-25	621 - 680	100	60 / 60	plus

Contig Sequence (1160 bp)

>U35_19879 1160 Hv_44K_v2
TGAGTGCGCAGCAGACGCAGATCCCATTCTATTAACACAAACCACACCACACCACACCAC
ACCAGCGAGGGGGAGAACAGAGAAGGGGAGGGGGAGAGGCAGCGCCCACGCTCGCGCTCC
CATCCGCCGCCAGCCATGGCGTCGGGGGTGTCCACGAGCATGGTGCTCACGCTGCTCGGC
TTCTGCGTCAGCGTGCTCTTCATACTCTTCGTCTGCTCCAGGCTCGTCTGCGCGCTCGTG
CGCCGCCGTCGGCGCCGCTCCCGGGCCTCGCCGCTCCCGCCGGGCTTCCCGCCCCTCGCC
GCCAACTACTTCTTCGCCGTCCAGGTCGACCGCCTGGGGGGGCAGCCAGCGGCCGGCCCC
GGCGCCGGGGGGCTTGACCTGGCCGCCGTCGCCTCCTTCCCCACCCGCGCCTTCTCAGCT
GCATCGCCCTCCTCAGACTCCGACTCCTCCGACGCGGCCCCGCAGTGTGTTGTTTGTCTT
GCAGAATACGAGGACAAAGATGTGCTCCGCACTCTTCCTTACTGTGGCCACAATTTCCAT
ATGGTGTGCATAGATGCTTGGCTAAAGCAGCACTCAACGTGCCCAGTCTGTAGAATTTCA
CTGTCTGACTATCCTGATATCAAGCATATTGCGCCTCCTTTACCAAGTGCAGTGGTGATA
CCAATACCTATACCTCCTTATTCCCCCGAAGCATCCATATCGGATCCGTGTCATTGCCTG
TTTGTCGGCACGGGGCATTCGCCAAGGCCATCGGAGGTTCTTCAAAGCGAACCCGACCAG
GCGAATCGGACAGTACCCGGTCCATCCTTGGATGGGCCAAACAACTTGACGTTGTCTGAG
GTTACCTCTCCTGGCGAAATAACAACGAAACAGTAAAACAGCACATGGAGAGTCCTTGTA
TTCCCAGCAGGTCGTGATCTGCCCAGCTAAGCCCCCAGCAAGTAGCTGTTTGGAGTTTCT
TTTGTGCCGTGTGTTGCACGGTGCGGTGAACAACCTGTAAACCTGGAAACATCTGCCCAT
GTGGATGTCTGTTATAGGTTAGATTTCCGCGGGTTCGATGTAAATATGAGAAATCTTTGG
GTTTCTTGTCGAAAAGCCACACATTTGCTCGATAATTTCACTGAAAACAGTCCATTATAT
CAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_19879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g42620.1	246	5e-84
Arabidopsis v10	None