- Probe CUST_25437_PI390587928
- Source Contig U35_40643
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_25437_PI390587928 | Hv_44K_v2 | AAAGCTCCTGCACGGGATTTCGTTTGGAAATTGGAATGAAATAAAACTGGGGATTGGGGG | 22 | GeneList: darkslateblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 2.231 | 3.308 | 1.236 | 0.849 | 0.396 | 0.507 |
Raw | 804.529 | 1749.271 | 570.548 | 631.267 | 100.074 | 139.038 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest35 | U35_40643 | 365 | 3e-25 | 23 - 82 | 100 | 60 / 60 | minus |
Contig Sequence (365 bp)
>U35_40643 365 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGACCCCCCCAATCCCCAGTTTTATTTCATTCCAATTTCCAAA CGAAATCCCGTGCAGGAGCTTTACCCTTACCGTTACCTGACTAATTGCCCTAAACTATGG CTCCCGCTCAAGAAATCTCACTTGGGACCTCCGGGTCAAGGGCTCTTCTTCTTCTGCTGC TGGTGCTGCTGCTTCAAAAAAATCCCAGCCGGCTGATTGAACCCAACAACGTGTAATAAT AGGTAAAAAAAACCCCGTCTTGGTGACTCCAGTAGCATCCGGGAAAGGGGCATCTGAAAT ATGGAATGCTTGTGACGAAAAAAAAGAACCGTCCGACTCCGAACACTTCACTTCACTTCA CTTGG
Homology of Contig U35_40643 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |