barSeed - Barley Seed Development Database

Probe CUST_25431_PI390587928

Source Contig U35_26353

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25431_PI390587928	Hv_44K_v2	TGTTGACGATGATGTTGAAGATGGCGATGAACCTGAAATCATTCTTGTTGATGAAGTTGA	803	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.543	0.902	1.059	1.479	0.861	0.870
Raw	134.777	367.020	358.794	813.814	159.875	178.223

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68577.1	1677	2e-24	1497 - 1556	100	60 / 60	plus	None
JLOC1	JLOC1_45381.2	1073	8e-25	872 - 931	100	60 / 60	plus
JLOC1	JLOC1_45381.1	1271	8e-25	872 - 931	100	60 / 60	plus
Harvest21	ABC25641	866	3e-25	804 - 863	100	60 / 60	plus
Harvest35	U35_26353	866	3e-25	804 - 863	100	60 / 60	plus

Contig Sequence (866 bp)

>U35_26353 866 Hv_44K_v2
TCCGGCTGTCCTTCTCACCCGCGACCGGCGCTCATGGAGGCCACAGCCGCGTCGACGCGG
CCTCTCTTCCTCCTGGCGCCCTCCCCGCCGCTGGTAAGCACGGTGCGCCTCTCCCTTCGC
GTGGGGAGGCGCCGGCTCGTAGCCGCGGGGGCCAGGAAGAAGAGGGGGCGGCAGGACGGG
GATGCGGGGGAGGAGAGGGTGGACGCGCACAGCTTCAACCCCAAGGACGGCGAGGTCACC
GGGCCATTCCCCGAGGCCGTGCTTCTGAGAAAGAAAAAGGTGAAAGAGGACGGTGAAGCT
TTGCCAGAATTCGCGGACGCCGAAGAAGAAAAGCTATACGAGCTTCTTAACATTCAGCTA
GAGAGTGGTTTAAATTTGCAAAGAATGCGGCACTATGAAGTTGTTTACCTCATTCACGAG
GACCGTGTGGAAGAAGTTGAAGACGTTGTATCCAAAGTACAAGACTTTATCAGAGAGAAG
AAAGGAAGGATTTGGAGGGTTAACAACTGGGGACTGCGTAGACTTGCTTACAAGATAAAG
AAAGCAACGCATGCCAACTACATCCTAATGAACTTTGAGATACAGGCACAATCCATAAAT
GATTTCAAGACTCTGCTAGATAAGGATGAAAGAATCATTAGACACCTTGTGATGAAACGA
GATGAGGCGATTACTGAAGACTGCCCTCCTCCACCAGAGTTCCACGCAATGCGATCTCAA
CAGTTGGATGATGAATATATTGATGAGGAATATGGGAAGGCGGACGATGCGGATGATGAG
GCTGAACTAGAGTCTTTTGGCAATGTTGACGATGATGTTGAAGATGGCGATGAACCTGAA
ATCATTCTTGTTGATGAAGTTGACGA

Homology of Contig U35_26353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37610.1	318	2e-102	protein\|ribosomal protein S6, putative, expressed
Brachypodium v1_2	Bradi4g04560.1	303	4e-123
Arabidopsis v10	AT3G17170.1	314	7e-79	\| Symbols: RFC3 \| Translation elongation factor EF1B/ribosomal protein S6 family protein \| chr3:5853186-5854853 REVERSE LENGTH=314