barSeed - Barley Seed Development Database

Probe CUST_2542_PI390587928

Source Contig U35_26257

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2542_PI390587928	Hv_44K_v2	TTATCCAAGAAAAGAATGTTACCTGCCATAGTGTGTCTTGCCATACAATACCGCCATATT	1051	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366548	1915	7e-23	1767 - 1826	98	59 / 60	plus	ABC15624 ABC24807
MLOC	AK375899	1587	7e-23	1490 - 1549	98	59 / 60	plus	ABC15624 ABC24807
MLOC	MLOC_32264.1	143	7e-23	67 - 126	98	59 / 60	plus	ABC24807
Harvest21	ABC24807	1168	3e-25	58 - 117	100	60 / 60	minus	ABC24807
Harvest35	U35_26257	1168	3e-25	1052 - 1111	100	60 / 60	plus

Contig Sequence (1168 bp)

>U35_26257 1168 Hv_44K_v2
GGGTTCATGGGGAAGAGGAAGAAGCAGAAGGTGATCCACGGCCAGCACGCGACGCCGAGC
CACCACGCGCCTCCTCCCCTGTCGCTCCGCCATCTGACGGGACGGCGTACTGGGCCTTGC
CGGACGGCGAGGACCAACGGGTCAATGGTCGTCCACCCTGGGCCAAGGTGGAAACTATGT
CATGGGAAACTATCTGTTAAATGCATTTCGCTGGAGTGAAACTGTTGGACCCTGGGAGGA
GAGACCTGGTCATTTTAATGATGTTTGGGGCTACTGGACTGATGATGGACTTGGATTCTT
TGAGTTCCTTCAATTAGCAGAAGACCTTGGTGCTTGCCCAGTTTGGGTGGTCAATGATGC
CGATATGAACAAGTACCATCTGCCACAATAGCTGCTTTTGTAAAGTATTGAGTTTGCGAG
GGGAGACCCTGGGACTTCATGGGCTTCAGTTCGTGCAGCAATGGGACACCCAGAGCCCTT
TCAGCTTAATTATATTTCTATGGGAAATGAGGAATGCTCAATGCACTACTATAAAGAGCA
GCAGCAGAGCATGAACCTGAATGAACCGCTAACTTATAATTTACTCATGGATTGCAAGAC
CACCTACGGATTCAACTCGTGCATCATGGACCACGCCCCCTTGATCATGCCGAGGCTCGT
CATCGGGGCCGTCATCCAGCTGCTGTGCAGCTACAGCACCCTGCCTCTGTACGCGATCGT
CACGCAGATGGGGACCTTCTACAAGAAGGAGATCTTCGATGAGCACGTCCAGCAGGGGCT
GCTGGGGTGGGTGCAGAAGGCCAGGATGAGGACGGAGTTATTCAAGGATGCTGCTGCAAC
CGCGGCCGGACCCGCCAGACATGGCCCGTCATCCCGGCTGGAGATGCTGCGACGCGCCGC
CGCCTTGATGCAGTGCCGTGGCGCGCCGCCGAGATGAAGTGCCATGAATCAATCAGTCGA
GACACAACCAAGCGACAACAACAACTAAAAAATGGTGATCGTTTCAATCTATTATATGGT
TCTATATATCCAAAGGAATTGACACCGATTATTATCCAAGAAAAGAATGTTACCTGCCAT
AGTGTGTCTTGCCATACAATACCGCCATATTATANTTTTAGAAATGTGATGTAAATCTTA
TTCGTTTGCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_26257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20420.3	518	3e-61	protein\|alpha-N-arabinofuranosidase A, putative, expressed
Brachypodium v1_2	Bradi1g63990.2	676	3e-65
Arabidopsis v10	None