- Probe CUST_25421_PI390587928
- Source Contig U35_38331
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25421_PI390587928 | Hv_44K_v2 | GGAGTCATCATCATTGTGATCTTTGAGCTTTGAGTAACTAAAAAGTGTGATGATCATCAT | 126 | GeneList: grey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.487 | 1.390 | 1.126 | 0.543 | 1.516 | 0.139 |
| Raw | 140.881 | 191.133 | 146.419 | 108.730 | 89.136 | 10.901 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC34256 | 253 | 3e-25 | 127 - 186 | 100 | 60 / 60 | plus | ABC34256 |
| Harvest35 | U35_38331 | 253 | 3e-25 | 127 - 186 | 100 | 60 / 60 | plus |
Contig Sequence (253 bp)
>U35_38331 253 Hv_44K_v2 GGAGATATATTGCCATGCAACTACCACCGCTCCGTCTCATGACTTGTGCCGTCACTCTCA TATTGCCATCGCATGATCATACTAGATCGTTGCACATCCCGGTACACTGCCGAAGGGATT TCCTATGGAGTCATCATCATTGTGATCTTTGAGCTTTGAGTAACTAAAAAGTGTGATGAT CATCATTATTAGAGTATTGTAATTCATGTGATGTGTTACTGAAATGAAATATATACAAAA AAAAAAAAAAAAA
Homology of Contig U35_38331 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |