barSeed - Barley Seed Development Database

Probe CUST_25418_PI390587928

Source Contig U35_38334

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25418_PI390587928	Hv_44K_v2	TTGAAACATTTTTCCTGTCTAGATGTCATCAAGCACTGGAGGAGCAGTTTCAGCGGAAGG	581	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.201	0.376	1.133	1.902	1.185	1.041
Raw	21.436	65.249	164.319	431.795	94.897	90.389

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11487.1	5816	2e-24	953 - 1012	100	60 / 60	minus	None
MLOC	MLOC_11487.2	5081	2e-24	246 - 305	100	60 / 60	minus	None
JLOC1	JLOC1_7611.1	4414	8e-25	415 - 474	100	60 / 60	minus
JLOC1	JLOC1_7610.1	4135	8e-25	3941 - 4000	100	60 / 60	plus
Harvest21	ABC34261	727	3e-25	582 - 641	100	60 / 60	plus
Harvest35	U35_38334	727	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (727 bp)

>U35_38334 727 Hv_44K_v2
GCTTCCTTCATCACTTCGATTCCTCGAGTTAAGACGGTGCTACCTGCAACCATCCTCTTT
TTCCAAGTTATTGAAGAATCTCCCGTCACTTGTTACACTACACTTAATAGAATGTGACAC
TGTTGAGATACCGGGTTTACCGGTAAGCTTGCACCTATTGAGGATGCTGAAACAGTTGTA
CATATATAAATGTGATTGGATATCATCTTTTGAGGGATCAGAAGCACTGTTGTCCCTTGA
AGAGATGAAGATAGACCAATGTTATGATCTGGAATATGTACCGTACTTGGATGACATGCC
ATGTCTTCAGAAACTACATTTGTCCCGGTGCCCTCAAGTTATGCGACTGTCTAAAGCAGT
CCACCAAACAACACTGAAAGAGCTGGTTGTAAGATCTTGCGATGGGCTATCATCTCTGCG
AAAATTGTGTGACCTTGTTTCACTTGTGAAGCTGACGATTACTGATTGTTCTGATTTATT
GTGGCTTCCTGATATGACTGGTTTTTATTCGCTCCGGGTTCTCTCCATTGACCGGTGCCC
CCGGCTGAGGTCACTGCCACGGAGTGGTCTTCCTGTATCACTTGAAACATTTTTCCTGTC
TAGATGTCATCAAGCACTGGAGGAGCAGTTTCAGCGGAAGGAAGGTCCAGATTGGAACAA
GTTTGCCGCCCTTNCAGGATGCAAATGGGAAGCTGGTAGGCGGTAAATATTCAGGGCTTG
TTGTCAG

Homology of Contig U35_38334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None