barSeed - Barley Seed Development Database

Probe CUST_25414_PI390587928

Source Contig U35_38339

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25414_PI390587928	Hv_44K_v2	GGACAGCAACACGGACGTGTCCAAGTTCGCCCGGCTGGTGAACTCGGCGGACGTGATGGT	116	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373342	1733	2e-24	1192 - 1251	100	60 / 60	plus	ABC04687 ABC04689
MLOC	MLOC_64310.1	977	2e-24	906 - 965	100	60 / 60	minus	ABC04687 ABC04689
MLOC	MLOC_50048.1	229	3e-21	122 - 181	97	58 / 60	plus	None
JLOC1	JLOC1_42217.1	924	8e-25	853 - 912	100	60 / 60	minus
JLOC1	JLOC1_31972.1	154	2e-21	85 - 144	97	58 / 60	plus
Harvest21	ABC34270	176	3e-25	117 - 176	100	60 / 60	plus
Harvest35	U35_38339	176	3e-25	117 - 176	100	60 / 60	plus

Contig Sequence (176 bp)

>U35_38339 176 Hv_44K_v2
CGGCGCCGGCCGCGGCTCCTCATCATCTCCCGCAAGAACTCGCGCGCCTTCCTGAACGAG
CGCGCCATGGCGGACATGGCCATGAGCCTCGGGTACGACGTGCGCGTGGGCGAGCCGGAC
AGCAACACGGACGTGTCCAAGTTCGCCCGGCTGGTGAACTCGGCGGACGTGATGGT

Homology of Contig U35_38339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None