barSeed - Barley Seed Development Database

Probe CUST_25412_PI390587928

Source Contig U35_14381

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25412_PI390587928	Hv_44K_v2	CCGCTGAGAATTTAATTTGAACCAACACTTGACGTACTGTTATATGTCTAGACTGATATT	601	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69312.3	1850	2e-24	1034 - 1093	100	60 / 60	plus	ABC01542 ABC47643 ABC49984
MLOC	MLOC_69312.1	1397	2e-24	934 - 993	100	60 / 60	plus	ABC01542 ABC47643
Harvest35	U35_14381	1200	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (1200 bp)

>U35_14381 1200 Hv_44K_v2
AAAGAAGCAGCTGAGAACACTCTTGTTGCGTACAAGTCAGCCCAGGTTAGATTTTATGGA
TCGTTTGCTACTTTGAAACATCCAGTTTCACCTACCAGTTTGCTTTATCATCATTCTCTT
GCAAAATTGAGTACATGTTCCATCTTTCCTGTTTGGGACCAAGTTCCTTCAATTTTTCGG
ATATGCTATACTACTGGCTATTCTTTTCTTTGTGTATGTTCTCTTTCATTGGGTGCACAT
GCTGACATCTTTTTACTTGTTCAGGACATTGCTCTTGCTGACTTGCCTACCACTCACCCG
ATTAGGCTTGGGCTTGCACTCAACTTCTCAGTGTTCTACTATGAAATCCTGAACTCTCCA
GACCGTGCTTGCAACCTTGCCAAGCAGGTTAGTCTTCTCTGTTTTGTACTTCATATCTTT
TGATGATGAAAAGTACACCTGAGTGCTATTCCTCATTGAAGCTATACCAGTCTGATCTCT
GGTTATATTGTCACATCAACATTTCTTATGCTTTCCTTTATGGTAGAGCATTGTCAAGTT
TTTGTATGCAAGATGAACATAAATCCTTGCTAACTATGCCAACCACTCAAAATGATTCAT
GCCGCTGAGAATTTAATTTGAACCAACACTTGACGTACTGTTATATGTCTAGACTGATAT
TAATACTGGTATGTATACTTCTTGGTAGGCATTTGATGAAGCTATTGCTGAGCTGGACTC
CCTCGGCGAGGAATCCTACAAGGACAGCACCTTGATCATGCAACTTCTTCGTGACAACTT
GACCCTCTGGACCTCCGATAACGCAGAGGAGGGTGGTGATGAGATCAAGGAAGCTGCCTC
AAAGCCTGAGGGAGAGGGGCACTGATTGGCCCTCAAGAGTGTGCCCAAGTTTATTTCTGA
GTCCATTTACGCAGCTACCTGTATCATTCGGATCATAAGATGTACTAGGGTCGGTTGCAC
TATGTGAATCATAAGATGTGGTAGGATGGTGCTATGCGAAGCGTGTCGAGCTGAAGTACC
TAGTGGACTACAGTCATGAGGACGGTCATGTGGACATCGTCGCTTCTTAGTTCATTAGCA
GATTTCAAACTATTTCCTGTATTGCAGCACATTATTAGTATTGCTGTATTAGCAATTTTC
ATGGCTTGTTGATGATTGATCATACTTCGCGTAAGGCGCCCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None