barSeed - Barley Seed Development Database

Probe CUST_25411_PI390587928

Source Contig U35_14382

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25411_PI390587928	Hv_44K_v2	CAACTGAGATTTTCTTGTCTACTTTCCCTCTCAAAATAATTGAAGTTCTAGGATTCTTCC	1274	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69312.3	1850	2e-24	1734 - 1793	100	60 / 60	plus	ABC01542 ABC47643 ABC49984
MLOC	MLOC_69312.2	1402	2e-24	1242 - 1301	100	60 / 60	plus	ABC01542 ABC01543 ABC47643 ABC49984
JLOC1	JLOC1_45912.1	1433	8e-25	1242 - 1301	100	60 / 60	plus
Harvest21	ABC01542	1429	3e-25	1290 - 1349	100	60 / 60	plus	ABC01542
Harvest21	ABC47643	449	6e-22	21 - 80	97	58 / 60	minus	ABC47643
Harvest35	U35_14382	1448	3e-25	1275 - 1334	100	60 / 60	plus

Contig Sequence (1448 bp)

>U35_14382 1448 Hv_44K_v2
TATTCCTATCCCCCCCGCCCCTCCCCACGAACCCACCCCACAGCCAGCGCCCACTCGCCC
GAGATCCGCTGCCGAGGCCCGTGAGAACTCCGCCGCGCCAGAGGAAAAGGCACTGAACTA
GGTTGTAACAAGGAACAGGGAAGATGTCTACCGCTGAGGCAACCCGTGAGGAGAATGTGT
ACATGGCCAAGCTCGCTGAGCAGGCTGAGCGTTACGAGGAAATGGTCGAATTCATGGAGA
AGGTGGCAAAGACCGCTGATGTCGGTGAGCTCACTGTTGAGGAGCGCAACCTGCTGTCTG
TGGCTTACAAGAATGTGATTGGTGCCCGGAGGGCATCCTGGAGGATCATCTCCTCCATTG
AGCAGAAGGAGGAGAGCCGTGGGAACGAGGCCTATGTCGCTTCGATCAAGGAGTACCGTA
CCAGGATTGAAACTGAGCTCAGCAAGATCTGCGATGGCATCCTCAAGCTTCTGGACTCCC
ACCTCGTCCCCTCTGCGACTGCAGCAGAGTCCAAGGTGTTCTATCTGAAAATGAAGGGTG
ATTACCACAGGTACCTTGCGGAGTTCAAGGCCGGTGCTGAGAGGAAAGAAGCAGCTGAGA
ACACTCTTGTTGCGTACAAGTCAGCCCAGGACATTGCTCTTGCTGACTTGCCTACCACTC
ACCCGATTAGGCTTGGGCTTGCACTCAACTTCTCAGTGTTCTACTATGAAATCCTGAACT
CTCCAGACCGTGCTTGCAACCTTGCCAAGCAGGCATTTGATGAAGCTATTGCTGAGCTGG
ACTCCCTCGGCGAGGAATCCTACAAGGACAGCACCTTGATCATGCAACTTCTTCGTGACA
ACTTGACCCTCTGGACCTCCGATAACGCAGAGGAGGGTGGTGATGAGATCAAGGAAGCTG
CCTCAAAGCCTGAGGGAGAGGGGCACTGATTGGCCCTCAAGAGTGTGCCCAAGTTTATTT
CTGAGTCCATTTACGCAGCTACCTGTATCATTCGGATCATAAGATGTACTAGGGTCGGTT
GCACTATGTGAATCATAAGATGTGGTAGGATGGTGCTATGCGAAGCGTGTCGAGCTGAAG
TACCTAGTGGACTACAGTCATGAGGACGGTCATGTGGACATCGTCGCTTCTTAGTTCATT
AGCAGATTTCAAACTATTTCCTGTATTGCAGCACATTATTAGTATTGCTGTATTAGCAAT
TTTCATGGCTTGTTGATGATTGATCATACTTCGCGTAAGGCGCCCCCAAAGCTTGTGCCT
TTCTTATGAGGCAACAACTGAGATTTTCTTGTCTACTTTCCCTCTCAAAATAATTGAAGT
TCTAGGATTCTTCCCTTAGAAAAAAAAAAAAAAATATTTTCTTATTATTATATCGATCAA
CATGTTCAACATCAAAAAAAAAAAAAAAAAAAATTTTAATTTTGAAATGTAAAAAAAAAA
AAAAAAAA

Homology of Contig U35_14382 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50290.2	261	2e-172	protein\|14-3-3 protein, putative, expressed
Brachypodium v1_2	Bradi1g11290.1	261	6e-177
Arabidopsis v10	AT5G38480.1	255	2e-148	\| Symbols: GRF3, RCI1 \| general regulatory factor 3 \| chr5:15410277-15411285 FORWARD LENGTH=255