barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25405_PI390587928Hv_44K_v2GCAATGAATGTAACCAAGTGATTGTGCTGTGACCTTTGTTTGCATGCAGGTGACAAGAAG904GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.3981.2551.1870.6420.3360.524
Raw 54.05844.12736.88232.6675.0589.798



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC0162111173e-25905 - 96410060 / 60plus
Harvest35U35_1438811173e-25905 - 96410060 / 60plus



Contig Sequence (1117 bp)

>U35_14388 1117 Hv_44K_v2
GGGGAACCCCCCCAGCAATCCACTACTACCCCCCGGCCTTAAACCCAACCCTAGGCCTCC
CCTCGCCTCCGGCCACCACTACCCGCCGCCGCCGGTCGCCATGGAGTTCTGGGGCCTCGA
GGTTAAGCCTAACCAGTCCATCAAGGTTTCTCCTGAAGATGACCACTTTCTCCATCTCTC
CCAGGCTGCCCTTGGTGAGGTCAAGAAGGATGACAAGACAACCTTGTTTGTCAGGGTCGA
CGGCGGCCAGAAGCTAGCCATCGGGACCCTCTCTATGGACAAGTTCCCTCAGATCCAGTT
CGACCTCGTCTTCGAAAAGGAATTTGAGCTGTCACACAATTCCAAGACAACAAGCGTCTT
CTTCTCTGGCTACAATGTTTTCCAACCTGCCCAGGGAGATGAGATGGATTTTGATTCTGA
AGATGAGTCTGAGTCTGAGGATGAGCAGGAGCCCATCATTCCGCCAGTCGCCAAGGAAAA
CGGCAAACCTGAAGCCAAGGAGCAGAAGAAGCAGGTTTTAATTGACACTGGATCTTCAAA
ATCAAAGGCCGCTGCCAAGGACATTGGAAAATCTAAGAAGGATGATGACAGTGATGATGA
TGGCAGTGATGACGACGACAGCGAAGATGACTCTGCTGATGGAGCATTGATTCCCATGGG
GGATGATTCTGATGATAGTGAGGAGGGTGATGAGGACTCTGACTCCGACGAGGACAGCTC
TGACGAGGAGGAAGAAGAAACACCCAAGAAGCAAGAGACTGGGAAGAAGAGGGCGGCTGG
AAGTGATATTAAGACCCCTGTTGCTGACAAGAAGGCCAAAATTGCAACACCATCAGGCCA
GAAAACAGGTGAGATCTGCTTCCTTGATAACCACATTGTGTGTTGTGTGATATCAATCAG
CCTTGCAATGAATGTAACCAAGTGATTGTGCTGTGACCTTTGTTTGCATGCAGGTGACAA
GAAGGGGGCTGTCCATGTTGCGACCCCGCACCCGGCCAAGAAGGTAGGCAAGACCCCAGC
AACCAGCGACAAGTCGCCCAAGTCTGGAGGGTCGGTGGCCTGCAAGTCGTGCACTAAGAC
ATTCAACAGCGAGGTTGCTCTAGCTTCGCACGCCAAG



Homology of Contig U35_14388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi2g14120.22531e-52
Arabidopsis v10None