barSeed - Barley Seed Development Database

Probe CUST_25394_PI390587928

Source Contig U35_40658

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25394_PI390587928	Hv_44K_v2	CCATTCAGGTTTTGTGGATGATGACAGTCCTTATGGAAAAGAAGATGACAAGGGCACATA	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364329	1547	3e-21	814 - 873	97	58 / 60	plus	ABC17718
MLOC	MLOC_57539.1	880	3e-21	656 - 715	97	58 / 60	minus	ABC17718
MLOC	MLOC_57539.2	1605	3e-21	647 - 706	97	58 / 60	minus	ABC17718
JLOC1	JLOC1_37311.1	1268	2e-21	526 - 585	97	58 / 60	plus
Harvest35	U35_40658	492	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (492 bp)

>U35_40658 492 Hv_44K_v2
GTGCCCCTCTGTTGCTCTGATGTTCCAAGTTGGAGAAAAAGCCACATATGATGATATGGG
TGGGTGCAAAGATTTGCCAGGTTCATGCACGAGCAAAAGTTGCAGAGATCATGAGGTCGA
CATTATGCACTTTTCAGTTGGAAATGCTATTCCTGGACGTCTTTATGGTGGTAATCACAT
AGATAATGTAGCTGGAAATGGAGGTGATAGGTAATTCTAATGTGTCTCTCATGGTAGTTG
TATAGTTATGCATAGTAGCATGTGAAGGTTTGATGTTGAAATACTTAATTCGTGTAGATT
TGGTCATCTTGTTGATGTCTATGCATGGAATCCCCATTGCCGCTACCTTGATGGTATAGG
CCCTAAAGAAAATAATTCAAATGCTCAAAATGATTGGCATGGGGCTTGGTGGCACAGTTC
CCTGACATTCCATTCAGGTTTTGTGGATGATGACAGTCCTTATGGAAAAGAAGATGACAA
GGGCACATATTA

Homology of Contig U35_40658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19580.2	303	1e-88	protein\|expressed protein
Brachypodium v1_2	Bradi1g64370.1	362	8e-88
Arabidopsis v10	AT3G62370.1	361	9e-70	heme binding \| chr3:23080789-23083234 FORWARD LENGTH=361