barSeed - Barley Seed Development Database

Probe CUST_25388_PI390587928

Source Contig U35_38342

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25388_PI390587928	Hv_44K_v2	CCGATTTCAATCGACTATTTTACTATCCGGGAATAATTAATAAATATCGGCTGCATTGTG	532	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.866	4.929	1.552	0.516	0.131	0.231
Raw	2128.947	3314.830	908.565	479.499	44.463	84.636

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15885.1	742	2e-24	72 - 131	100	60 / 60	minus	ABC34276
JLOC1	JLOC1_10923.1	676	8e-25	586 - 645	100	60 / 60	plus
Harvest21	ABC34276	619	3e-25	533 - 592	100	60 / 60	plus	ABC34276
Harvest35	U35_38342	619	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_38342 619 Hv_44K_v2
GCAAGGTTCCATGAGACCACAGAGCGCTAGCGCATTAGCTGCTACAACGGTGGTGTTTCT
GTCTTTGATCTGCATCATCCAGCTTTTCGTCTCGGTCACGGGAGTGTCCAGCTTTGTGAT
GGATAATTCTCCAAATAAGGCACGGCCCGATGCTGCAGCTGCCGCCGACAATCCAGAGGT
TGTACTCCCTGATGCCGTCAACGTTGAGGTCGACAGTGTGCCAGCGGTTGATCACGAACA
CCCAGATCCAGGAGACGTATTGGCTTGGGCATACAGACAGGGTCAAATTCATGCGGACCC
ACTTATGCAAAGGGTGGAAACCATTGGAGCGCTGCTCGACATGGAACTACAGATTGTTCC
CCCAATGCCCCACGCAGAGATCTTGGCAGCACTGGATGAGCTTGCCATGCTACCCATGCC
TACCATCGATCCTGCTCCCGTGGCCTCACAAGAGATGGATATAGATACCGAGGGGTNGGA
AGGGTGATGTGCCGCCACCCCCGCCAAGTCCCTGAGCCACACATATAAGCTGCCGATTTC
AATCGACTATTTTACTATCCGGGAATAATTAATAAATATCGGCTGCATTGTGATTTTATC
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_38342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None