barSeed - Barley Seed Development Database

Probe CUST_25385_PI390587928

Source Contig U35_38347

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25385_PI390587928	Hv_44K_v2	GAGCTAAAAACCTACTTTAGGCTTTTTATGCTATCGACATTCCTCCTGATGTTCATGTTC	615	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60395.4	1779	2e-24	1320 - 1379	100	60 / 60	plus	None
MLOC	MLOC_60395.6	721	2e-24	174 - 233	100	60 / 60	plus	None
MLOC	MLOC_60395.5	1560	2e-24	1329 - 1388	100	60 / 60	plus	None
MLOC	MLOC_60395.1	1788	2e-24	1554 - 1613	100	60 / 60	plus	None
MLOC	MLOC_60395.2	1911	2e-24	1344 - 1403	100	60 / 60	plus	None
MLOC	MLOC_60395.3	1820	2e-24	1344 - 1403	100	60 / 60	plus	None
JLOC1	JLOC1_39380.2	1880	8e-25	1327 - 1386	100	60 / 60	plus
JLOC1	JLOC1_39380.1	1899	8e-25	1346 - 1405	100	60 / 60	plus
Harvest21	ABC34282	678	3e-25	616 - 675	100	60 / 60	plus
Harvest35	U35_38347	678	3e-25	616 - 675	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_38347 678 Hv_44K_v2
AAGGATTATAACCCATTTGAGGAGGATCCTGGTACTGCTCCTTTCAGCGAACCTGAGGCC
CAGATCATGCAAGAACTATCCAAGTCATTCAAACCACATATCTGGGTGAATGTGCATTCT
GGAATGGAGGCATTATTTATGCCATATGACCACAAGAATACTACACCAGACGGAGCGCCT
TCTCACTTGATGAGGTCAGTTTTAGAGAATGTGAACCATCGCAATTTCCAAGATAGCTGC
CTAGTTGGATCAGGTGGTGGAGCTGTAGGGTACCTTGCACATGGGACTACAACTGATTAT
CTATATGACATTGCGAAGGTGCCAATGCCTTTCACATTTGAGATATATGGAGATGAGAAA
GCATCCACCGATGACTGCTTCAAAATGTTCAACCCTGTTGACAAGATAACATTTGATAGA
GTCATTAACAAGTGGTGCATGGCGTTTCTCATACTTTTCGAGGAAGGGCTGCGAACCCTA
CCTGATGGGCAAGTAGTATCTCAAGGAGCACTGGATAACTGGGTCCCTATGGGGGGAGAG
ATTTTGGAAAGAACTATGGATCAAAAGAGCGGCGGTGAAAATGGGAAGCTTGAAGGCCTT
GATCTCGNAATGCAAGAGCTAAAAACCTACTTTAGGCTTTTTATGCTATCGACATTCCTC
CTGATGTTCATGTTCTGC

Homology of Contig U35_38347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02710.3	368	7e-132	protein\|zinc carboxypeptidase family protein, putative, expressed
Brachypodium v1_2	Bradi3g01750.1	431	2e-141
Arabidopsis v10	AT5G42320.1	379	2e-82	Zn-dependent exopeptidases superfamily protein \| chr5:16918651-16920845 REVERSE LENGTH=379