barSeed - Barley Seed Development Database

Probe CUST_25383_PI390587928

Source Contig U35_38349

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25383_PI390587928	Hv_44K_v2	AACAAATTACACACGCTGCCACGAGTCGGCTTGGTGAATCTAAAACGGTTTTGAGTAGTA	577	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.462	1.813	1.471	0.832	0.314	0.311
Raw	708.733	1253.317	958.755	853.495	112.740	121.883

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62657.2	1857	2e-24	505 - 564	100	60 / 60	minus	None
MLOC	MLOC_62657.3	2232	2e-24	451 - 510	100	60 / 60	minus	None
MLOC	MLOC_62657.1	2210	2e-24	567 - 626	100	60 / 60	minus	None
JLOC1	JLOC1_41024.1	2172	8e-25	1561 - 1620	100	60 / 60	plus
Harvest21	ABC34284	681	3e-25	578 - 637	100	60 / 60	plus
Harvest35	U35_38349	681	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_38349 681 Hv_44K_v2
GGGAACGGGAAGAAGATGATCTTAGGCTGTTTAGTGAAATGCGCCAATGCCGAAGCAGAC
CAAGAGAACCGAAGTGGCCGTGAGAACATCAACAAGGATGAGAACTCCTGTAAACGAACC
GCGAGGCGCAATTGGGGGGAAGAACCCAAGGAGGTGCTGCAGGAGTCACGGGTTGAGGTG
GTGGAACCATTGCAGCCCGACATTCATGGCGACGACAAGGAGAATGCGCCGTGCTGCGAT
CAGCTCGCCGAGCAAGCCTTGATTCGGGAAGAAGAAGAAGAAGATGAAAACAGCAAGCGG
TCGGAGAACAATGAGAATGCTCCTCGCAAGGTGCTTAAAAGGCAGAACAAGGTGAATGCA
GAGCAGGGAGGGAAGCTTAAGAAAAATACCATCCTAAGGCCATTCAGGCTAAGGACTGAT
GAAAGACAGGTGTTGAAAGATGCAAATCCAGAAAGAAAACCTACGGCCTCCGAGAAGAAC
ACCATGCCAAAGGATGAAAATAGGCGAGTGATGCAAACTGGAAGATGCCCTGATGGTAAG
GAAAGAGATAAACTGACTTGTGGCGAGAAGCAGAGGAAACAAATTACACACGCTGCCACG
AGTCGGCTTGGTGAATCTAAAACGGTTTTGAGTAGTATCCGTCCCAACAATGCGAGGCCT
GCGCTGACTAAAGGCAAAACC

Homology of Contig U35_38349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g56070.1	546	2e-62	protein\|expressed protein
Brachypodium v1_2	Bradi1g07270.1	544	6e-80
Arabidopsis v10	None