- Probe CUST_25382_PI390587928
- Source Contig U35_14390
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25382_PI390587928 | Hv_44K_v2 | CAGCTTGAGAAGATGAAGAAGTATGCTACTGTTGTCCGTGTTTATGCCCATACCCAGATC | 516 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.889 | 0.800 | 1.822 | 1.921 | 0.932 | 0.823 |
| Raw | 4912.047 | 6753.713 | 13890.667 | 23053.007 | 3950.663 | 3822.687 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56031.2 | 1472 | 3e-21 | 680 - 739 | 97 | 58 / 60 | plus | ABC01623 ABC40739 |
| MLOC | MLOC_56031.1 | 1653 | 3e-21 | 578 - 637 | 97 | 58 / 60 | plus | ABC01623 ABC40739 |
| JLOC1 | JLOC1_36207.1 | 1492 | 2e-21 | 581 - 640 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01624 | 1462 | 6e-22 | 508 - 567 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01622 | 1040 | 6e-22 | 95 - 154 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14390 | 576 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14387 | 1463 | 6e-22 | 504 - 563 | 97 | 58 / 60 | plus |
Contig Sequence (576 bp)
>U35_14390 576 Hv_44K_v2 CCTCCACACACCACCCTCCCCCATCCGCCGCCGCCTCCACCTCCACCTCCACAGGGGAAG GAAGGGAGAAGGATGTCGCACCGTAAGTTCGAGCACCCGAGACACGGATCCCTCGGTTTC CTCCCCAGGAAGCGTTGCTCGCGCCACCGCGGAAAGGTGAAGGCTTTCCCCAGAGATGAC CAATCCAAGAAATGCCACCTCACTGCCTTCCTTGGCTACAAGGCTGGCATGACTCACATT GTGCGTGAGGTCGAGAAGCCTGGTTCCAAGCTGCACAAGAAGGAGACATGTGAGGCTGTC ACCATTGTTGAGACACCCCCTATTGTTATTGTTGGACTTGTTGCCTATGTGAAGACTCCT CGTGGCCTTCGTACTCTCAACTCTGTCTGGGCACAGCATCTCAGCGAAGATGTGAGGAGA AGGTTCTACAAGAACTGGTGCAAGAGCAAGAAGAAGGCCTTCACCAAGTATGCGCTGAAG TATGACAGTGATGCTGGCAAGAAAGAAATCCAGATGCAGCTTGAGAAGATGAAGAAGTAT GCTACTGTTGTCCGTGTTTATGCCCATACCCAGATC
Homology of Contig U35_14390 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g07010.1 | 390 | 1e-100 | protein|ribosomal protein L3, putative, expressed |
| Brachypodium v1_2 | Bradi4g24610.1 | 390 | 1e-105 | |
| Arabidopsis v10 | AT1G43170.1 | 389 | 9e-93 | | Symbols: ARP1, emb2207, RPL3A, RP1 | ribosomal protein 1 | chr1:16266992-16268631 FORWARD LENGTH=389 |