barSeed - Barley Seed Development Database

Probe CUST_25381_PI390587928

Source Contig U35_14391

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25381_PI390587928	Hv_44K_v2	AAATCTGCCTGGACTATAGTATCGTTTGGTTGGTCTGAAAAGTAAACCAAACTCACCGAT	1473	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.474	1.203	1.090	0.940	0.360	0.380
Raw	4246.310	5410.050	4336.900	5904.147	792.418	910.245

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24517.1	1710	4e-23	1499 - 1555	100	57 / 57	plus
Harvest21	ABC01623	1527	1e-23	1443 - 1503	98	60 / 61	plus	ABC01623
Harvest35	U35_14391	1557	3e-25	1474 - 1533	100	60 / 60	plus

Contig Sequence (1557 bp)

>U35_14391 1557 Hv_44K_v2
TCGAGCACTGTTGGCCTCCTGGCTGCACACAGCCGCCGCCGCCGCCGCCGCCGCCGCTGC
TCTACCGCAGGTAAGGAAGGAGCAGCGGCGATGTCGCACCGCAAGTTTGAGCACCCGAGG
CACGGTTCCCTCGGCTTCCTCCCCAGGAAGCGCTGCTCGCGTCACCGTGGAAAGGTGAAG
TCCTTCCCCAAGGATGACCAACAGAAGCCGTGCCACCTCACTGCCTTCCTGGGCTACAAG
GCTGGAATGACCCACATTGTTCGTGAGGTCGAGAAGCCTGGATCCAAGCTCCACAAGAAG
GAAACCTGTGAGGCTGTTACCATCATTGAGACCCCTCCTCTTGTCATTGTTGGTCTTGTG
GCATATGTGAAGACCCCTCGTGGCCTTCGCACTCTCAACTCTGTCTGGGCTCAGCACCTT
AGCGAAGATGTGAGGAGAAGGTTCTACAAGAACTGGTGCAAGAGCAAGAAGAAGGCCTTC
ACAAAGTACGCCCTCAAGTATGACAGTGATGCAGGCAAGAAGGAAATCCAGTTGCAGCTT
GAGAAAATGAAGAAGTATGCTACTATTGTCCGTGTTATTGCCCATACTCAGATTAGGAAG
ATGAAGGGCTTGAAGCAAAAGAAGGCTCACCTCATGGAGATCCAGGTTAATGGTGGCACC
ATTGCAGACAAGGTTGACTATGGCTACAAGTTCTTTGAGAAGGAAGTCCCAGTTGAAGCT
GTCTTCCAAAAAGACGAGATGATTGACATCATTGGTGTCACCAAGGGTAAGGGGTATGAA
GGTGTTGTCACTCGCTGGGGTGTCACCCGCCTTCCCCGCAAGACCCACAGGGGTCTCCGA
AAGGTTGCCTGTATCGGTGCCTGGCATCCTGCTAGGGTGTCTTACACTGTTGCCCGTGCT
GGTCAGAATGGTTACCACCACCGCACAGAGATGAACAAGAAGGTCTATAAGATCGGCAAG
TCTGGACAGGAGTCTCACGAGGCCTGCACTGAGTTTGACAGGACTGAGAAGGACATCACC
CCCATGGGTGGGTTCCCTCACTACGGTGTGGTGAAGGGTGACTACCTCATGATCAAGGGC
TGCTGCGTGGGCCCCAAGAAGAGGGTGGTGACCCTCCGCCAGTCCCTGTTGAAGCAGACC
TCGCGGTTGGCCCTTGAGGATATCAAGCTCAAGTTCATCGACACCTCATCCAAGTTCGGA
CATGGCCGCTTCCAGACAACCGAAGAGAAGCAGAGGTTCTACGGCAAGCTCAAGGCTTAG
GCTGCGACAGATCTTATCCCATAGTGTTACCAGCCTTTTTTTCTTCTTCTTCCAACCTTT
GTGGCAGATTGATTGGGTACCGGTTTATGCATTGCAATTGCAACTCTGAGCTGCTGCTGC
GAATATTTGAACTGACGTGTTTTATGCATTTTGAACTTGTGGCATGCCTTCAAATTTGAA
AGCTAATGTTTGAGCTGTGAAAAAAAAAAAAAAAAATCTGCCTGGACTATAGTATCGTTT
GGTTGGTCTGAAAAGTAAACCAAACTCACCGATTAGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g07010.1	390	protein\|ribosomal protein L3, putative, expressed
Brachypodium v1_2	Bradi4g24610.1	390
Arabidopsis v10	AT1G43170.1	389	\| Symbols: ARP1, emb2207, RPL3A, RP1 \| ribosomal protein 1 \| chr1:16266992-16268631 FORWARD LENGTH=389