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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25375_PI390587928Hv_44K_v2TAGTTGTTGAGCTTAACTTTGACACTATTTTTTGTTATTGCATGCATCGGCTCTAGAGTT2104GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.5791.9181.3930.7680.2250.327
Raw 264.019317.388195.139168.71617.43127.944



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC0381921861e-232100 - 21599859 / 60plusABC03819
Harvest35U35_1439721913e-252105 - 216410060 / 60plus



Contig Sequence (2191 bp)

>U35_14397 2191 Hv_44K_v2
CGTGCGGCGCCTCCTTTCCTCCCTTCCCCTCCTCCCCCTCGCCGCCGCCGCCGCCGCCGC
CAGCGACTCCTCCACCACCGCTCGTCCTCCGATACAGGTCAGGAGGAGGAGATGTTGGTG
CTCTTCGAGACGCCCGCGGGGTTCGCCCTCTTCAAGGTGCTGGACGAGGGGAAGCTCAGC
AGCGTCGAGGATCTGTGGAAGGACTTCGCGTCGTCGGACAAAGCAAGAAAGGTGGTTGAG
CTGAAGGCTTTCAACAAGTTTGAAAATACCTCCGATGCTCTTTCAGCTGCAACTTTGCTA
ATTGATAGCAAGCCCAGCAAAGGTCTGCGCAAGTTCCTGCAGAAGCACTGTGATGGTGAA
ACATTGGCTGTTGCCGATTCTAAACTTGGGAATGCTATCAAAGAAAAGCTGAAAATTGAT
TGCCTTCACAACAGTGCTGTCATGGAGCTGATGAGAGGGCTGAGGAACCAGCTTACTGAA
CTTATGTCTGGACTAGCTGAACATGATCTAGGTCCAATGAGCCTAGGATTGTCCCACAGC
TTGTCTAGGTATAAGCTGAAGTTCAGCCCTGAAAAGGTTGATACTATGATCATTCAGGCA
ATTGGCTTGTTGGATGATCTTGACAAGGAGCTTAACACTTATGCTATGAGGGTCCGTGAA
TGGTACGGTTGGCACTTTCCCGAGCTCACGAAAATTGTTGCAGATAATATCCATTATGCT
AAAGCTGTGAAGATGATGGGCAATCGTGTTAATGCAGTGAACCTTGACTTCTCTGAGATA
CTACCAGAAGAAGTGGAAGCAGAGCTGAAGGAGGCAGCTGTAATTTCCATGGGAACAGAA
GTCAATGAGCTTGACCTCTCGAACATCAGGGAACTGTGTGATCAAGTCCTGGCTCTTTCT
GAGTACAGAGCCCAGCTCTATGACTATCTAAAAAGTAGGATGAATACCATTGCTCCTAAC
TTGACTGCACTTGTTGGTGAACTTGTTGGCGCTCGCCTTATTGCACATGGTGGTAGTTTG
ATGAATCTGGCCAAGCAACCTGGCAGCACGATTCAGATTCTGGGGGCAGAGAAGGCGTTG
TTCAGAGCTCTGAAGACAAAGCATGCTACACCGAAGTATGGTCTCATCTATCATGCTTCA
TTAATTGGACAGGCGGCTCCTAAGCACAAGGGAAAGATCTCTCGTTCACTTGCTGCTAAG
TCTGCACTTGCCATAAGATATGATGCCCTTGCTGACGGTGATGATAACTCCATGGGTCTT
GAAAGCAGGATCAAGCTTGAAACACGGCTTCGGGTTCTTGAGGGTAAAGATCTTGGGAGG
TCTGCTGGTTCCACAAAAGGAAAGCCCAAGATTGAAGCGTATGAAAAGGACCGGAAGGGT
GGTGGTGCTTTGATCACTCCCGCTAAAACTTACAACCCAGCAGCAGATCTAGTGGTCGGG
CAAACAACTGAAGAAACACCAAAGAAGGAGGTGGCTTCAAAGAAGAGGAAGCACCAAGAG
GAAGAACCTACCGTGGAGGCAGCTGAAAAGGATGGTGAGCAGGAGAAAGAGAAGTCCAAG
AAGAAGAAGAAGAAATCCAAGGACACCGAGGAGACTCCCGCAGCTGATGCTGATGCTAGC
GAGAAGAAAAAGAAGAAGAAGAGCAAGGAAGCCGAGGAGACCCCTGCAGCTGACGCGGAC
GGCGAGAAGAAGAAAAAGAAGAAGAAATCAGACGCCGAGGACACCCCCATGGAGACTGAC
GTGTCTGCCAAGAAGAAGAAAAAGAAGAAGCATGCTGACGAGTGAGCAGCACGGAGATAT
GGCGGGAATTTGTGGTGTATTGCTGTACTATGATCGTCTGAAAGTTTTGGGACTTGCCAT
TCGTGTAGAATGGAATGCCACATTAGGACTAGCAGCGACGAACCCTACAATTCAAAACTT
GCAAGTGGTGAGCAGTCACTTTAAGAGGCCCAGTGCTGTGCTCTCATCTATAACATCTGC
TGTGTTCATTCTGTTTAGTAGTAATATATTTATCTCTTGTTAATTGCAAAAAAAAAAAAT
CATCCAGTCATTAGATTACACTTGCTGTGTAGGATGGGAACAACACTTTGCTCTACAGTC
ATTTTAGTTGTTGAGCTTAACTTTGACACTATTTTTTGTTATTGCATGCATCGGCTCTAG
AGTTTGTAAAAAAAAAAAAAAGAAAAAAAAA



Homology of Contig U35_14397 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g22740.15690.0protein|nucleolar protein NOP5-1, putative, expressed
Brachypodium v1_2Bradi1g18440.15610.0
Arabidopsis v10AT3G05060.15330.0NOP56-like pre RNA processing ribonucleoprotein | chr3:1413174-1415564 REVERSE LENGTH=533