barSeed - Barley Seed Development Database

Probe CUST_25374_PI390587928

Source Contig U35_40660

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25374_PI390587928	Hv_44K_v2	GCGATGTAACCTCGCAAATGTTGTTCTACAGCTCAAAGCTCTTGGGATTGATGATATCAT	258	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10967.2	2797	2e-24	1643 - 1702	100	60 / 60	plus	None
Harvest35	U35_40660	318	3e-25	259 - 318	100	60 / 60	plus

Contig Sequence (318 bp)

>U35_40660 318 Hv_44K_v2
GGTAGTTCTAGCAACAAATATTGCAGAGACTTCTGTAACGATACCTGGTATTAAATATGT
TATTGATCCTGGGATGGTCAAAGCGCGCGCCTACAATCCTGTAACTGGAATGGAATCGCT
AATTATCATCCCTGTCTCTAAAGCACAGGCTCTTCAAAGGAGTGGCCGTGCTGGACGTGA
GGGGCCAGGGAAGTGCTTTCGGTTGTTCCAAGAATGTGAGTTTGATAAACTGGCGGAATC
TACTATTCCTGAGATTAAGCGATGTAACCTCGCAAATGTTGTTCTACAGCTCAAAGCTCT
TGGGATTGATGATATCAT

Homology of Contig U35_40660 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g09280.1	855	3e-60	protein\|ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g16730.1	698	2e-63
Arabidopsis v10	None