barSeed - Barley Seed Development Database

Probe CUST_25371_PI390587928

Source Contig U35_14399

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25371_PI390587928	Hv_44K_v2	GTTTCATCGATCAAGTAAATTGATCTCTATGCATGGTTGAATGAATTCTTTCTCTGTGTC	717	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.088	1.063	1.508	1.137	0.549	0.391
Raw	915.979	1403.054	1758.453	1962.869	352.046	270.610

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364491	1331	2e-24	1190 - 1249	100	60 / 60	plus	ABC01434
MLOC	MLOC_43874.1	941	2e-24	345 - 404	100	60 / 60	plus	ABC01434
JLOC1	JLOC1_28383.1	706	8e-25	432 - 491	100	60 / 60	plus
Harvest35	U35_14399	794	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_14399 794 Hv_44K_v2
TGGGGCGGTCAGAGGAGATCCGGCGGTGGAGGCGCCGGTGGGGCCTGCTTCAAGTGCGGC
GAGCCTGGCCACATGGCCAGGGACTGCTCGGTCAACGGCGCCGCTGGCGGCGGCGGCGGC
GGCGGCTGCTACAAGTGCGGCGAGCAAGGCCACATCGCCAGGGACTGCTTCAACGGCGGC
GCCGGCGGGGGAGGAGGCGGCTACGGGGGAGGAGGAGGCGGCGGCACCTGCTACAACTGC
GGCGAGCCGGGCCACATCGCCCGTGACTGCCCCACCAGCAGCGGCTTCGGCGGGGGCGGC
GGCGGCGGCCGCTTCGGCGGAGGAGGAGGCGGCGGCGGCGGCGACCGCTCCTGCTACAAC
TGTGGCGAGCCCGGCCACATCTCCCGCGAGTGCACCAAGTGAGGGGATCTCTGCCCCTCC
CCCCTCTATAGACGTCGCCTAAATACCTCTCGTCTTAGTTTTGCCGATCGATCGCAGCCG
CCTCGCAGCTTATTTTACCTTGCTCCCTCTCCCCCCCTTCCGTCCTTAGGGGAAGCTCGT
CCGAAAGTTAAGTCAGTCAGTCAGTCCGTGTGATGGTTAATTTTGCTATGAATTGGTCCG
GTACCGGTACCCGTACTCTCAGTTGATGTTTAAGGTCGTGATGATGGATTATTGTCGGTG
ATTTTTGTGTGTGGTGATGATGATGAGGAGATTGCAACAGATCTCTCTTTTTTTTTGGTT
TCATCGATCAAGTAAATTGATCTCTATGCATGGTTGAATGAATTCTTTCTCTGTGTCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_14399 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None