barSeed - Barley Seed Development Database

Probe CUST_25354_PI390587928

Source Contig U35_38350

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25354_PI390587928	Hv_44K_v2	TTCTTTACATCACCATCTACGTCAGCTTCTCCATTGCTGCAATGTACGGCATTGCAATGG	372	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.707	1.201	2.065	1.187	0.240	0.287
Raw	54.151	60.667	87.627	80.553	4.149	6.774

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC34285	519	3e-25	373 - 432	100	60 / 60	plus
Harvest35	U35_38350	519	3e-25	373 - 432	100	60 / 60	plus

Contig Sequence (519 bp)

>U35_38350 519 Hv_44K_v2
GCCGCCATCTCTGAAGGGGCAACATCATTCCTTTTACCATGTACCAGTACGTTGGTATGT
TCATGGTTGTCTTTGCTGCGATTATCTTCCTCTTCCTTGGATCGATCGAGGGATTCAGCA
CAAAGGGCCAGCCCTGCACCTACAGCAAGGGCACCTGCAAGCCAGCCCTATACACTGCTC
TCTTTAGCACTGCATCTTTCTTGCTTGGAGCCATCACATCTCTGGTGTCTGGTTTCCTTG
GAATGAAGATCGCCACATATGCCAATGCCAGGACGACCCTTGAAGCAAGGAAGGGTGTTG
GGAAGGCATTTATCACCGCTTTCCGCTCTGGTGCAGTCATGGGCTTCTTGTTGTCATCAA
GTGGTCTTGTGGTTCTTTACATCACCATCTACGTCAGCTTCTCCATTGCTGCAATGTACG
GCATTGCAATGGCTGCTCTTGGCATGCTAAGCACAATGGCAACTGGTCTTGCCATCGATG
CTTATGGTCCCATTAGTGACAATGCTGGTGGAATTGCTG

Homology of Contig U35_38350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08080.1	768	3e-53	protein\|inorganic H+ pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi1g47767.1	763	4e-59
Arabidopsis v10	None